PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00453.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 137aa    MW: 15110 Da    PI: 6.0081
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00453.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB161.61.2e-5025113290
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p
  Zpz_sc00453.1.g00010.1.am.mk  25 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDP 105
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkky 90 
                                   ++ yl+  
  Zpz_sc00453.1.g00010.1.am.mk 106 MRRYLHXX 113
                                   *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-4721119IPR009072Histone-fold
SuperFamilySSF471135.74E-3627121IPR009072Histone-fold
PfamPF008083.0E-273093IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.4E-145876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.4E-147795No hitNo description
PRINTSPR006154.4E-1496114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MADHHGQEDD DGRRAGGAGA AEEIKEQDRL LPIANVGRIM KQILPPNAKI SKEAKETMQE  60
CVSEFISFVT GEASDKCHKE KRKTVNGDDV CWAFGALGFD DYVDPMRRYL HXXXXAREGH  120
RTTPPPARAP PPDPAAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A7e-4119111193NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00453.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701981e-132EU970198.1 Zea mays clone 342117 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459056.18e-63nuclear transcription factor Y subunit B-1
RefseqXP_004971188.18e-63nuclear transcription factor Y subunit B-1
SwissprotO822482e-52NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A368RFG32e-61A0A368RFG3_SETIT; Uncharacterized protein
TrEMBLC5XH512e-61C5XH51_SORBI; Uncharacterized protein
TrEMBLK3XSH51e-60K3XSH5_SETIT; Uncharacterized protein
STRINGPavir.Ea03968.1.p5e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-54nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]