PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00465.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 172aa    MW: 18114.6 Da    PI: 8.8548
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00465.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.71e-13921434394
                                   S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
                            B3  43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                                   grsW++++  +++++   l++GW++F+++ngL+ gD +vF+l+ g  ++++ ++
  Zpz_sc00465.1.g00160.1.am.mk  92 GRSWDMRF--TGGRQFLRLEAGWRGFAQDNGLRLGDGCVFELVdGAaEGGTVKF 143
                                   8*******..*******************************8846667775444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1650151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-1650151IPR015300DNA-binding pseudobarrel domain
CDDcd100174.70E-1452149No hitNo description
PROSITE profilePS5086312.43554151IPR003340B3 DNA binding domain
SMARTSM010190.002858151IPR003340B3 DNA binding domain
PfamPF023625.7E-1162142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSCNAGTSKG KAAVNSAEKS GEAAVGPATG PDSLPVSGKK CAERIQPLSG KPYFSCIVCK  60
SHVQPPFQVV VPRSVAPFLP PRTAPATLTW CGRSWDMRFT GGRQFLRLEA GWRGFAQDNG  120
LRLGDGCVFE LVDGAAEGGT VKFSVQVLRA DVPSAIRERA GGYTSSSPIE ID
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00465.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975400.15e-71B3 domain-containing protein Os04g0386900
SwissprotQ7XLP46e-63Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A0A9HBU54e-83A0A0A9HBU5_ARUDO; Uncharacterized protein
STRINGMLOC_48372.11e-67(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]