PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00471.1.g00280.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 289aa    MW: 30897.9 Da    PI: 7.6002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00471.1.g00280.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09118165455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      h +rEr RR+r+ ++f+ L  llP+       K  K +i+  Av YIk+L+
  Zpz_sc00471.1.g00280.1.sm.mkhc 118 RHIMRERLRRERLSQGFADLHALLPPG----TSKGGKNDIVGAAVGYIKELE 165
                                     599***********************5....47888999**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-14113181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-12114183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.249114164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-7118165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-5120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDSFYFDVVQ DAVIGIGDDG YLASLGGVTL PPAPGGAFAA YQQGKSLEPG LTMSRGGGRY  60
SSSSGGANVH RRMFWYLRRI GDAAAAPSTG NVAVGADSEP SHRDAETSQA PRGSSRFRHI  120
MRERLRRERL SQGFADLHAL LPPGTSKGGK NDIVGAAVGY IKELEGRRRR LRARNDELLE  180
QEARTGSSMV VTVRAEIEQH SVAVDVFGMV LQRLQAMEEL QVTGIGSCFD GGSMWMNVAV  240
HCQVSSPDVG KAVTNALMKA LEENAVGMQV PGSSGPPFSC QVERGAPMW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00471.1.g00280.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9488637e-41EU948863.1 Zea mays clone 388069 mRNA sequence.
GenBankKJ7280307e-41KJ728030.1 Zea mays clone pUT6169 bHLH transcription factor (bHLH79) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701619.12e-80transcription factor BHLH148
TrEMBLK3XK974e-79K3XK97_SETIT; Uncharacterized protein
STRINGSi002320m6e-80(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432