PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00478.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 250aa    MW: 26298.7 Da    PI: 10.3672
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00478.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind68.61.3e-21175236260
                                   HHHHHHHHHCTGGGTTTSEES.SSS..SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
                  HSF_DNA-bind   2 Flkklyeiledeelkelisws.eng..nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                                   F+ k+ye++ d++++ ++sw   +g  n+fvv+d++e+a ++Lp++Fkh nfaSFvRQLn+Y
  Zpz_sc00478.1.g00120.1.am.mk 175 FVAKTYEMVADPATDAVVSWGgPDGagNTFVVWDPRELAASLLPRFFKHANFASFVRQLNIY 236
                                   9*******************9855445*********************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-14171242IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-18171237IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-22172241IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-17175236IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-11175198IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-11216228IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-11229241IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MYVLNYARDS REFAVRDAAG AGPQDASPLL APPGAPRWRS YLEQRGRGAR TTWTPALFAA  60
TAPGTYSMLA QESVGVHRIS RIPLATAGAR GVSSRHVSQL GPSSSVLAYM GREFCAKHAE  120
RPRQQQPAAP VHTTPAQAPA AQGKQSAMAP LVVKPEPLAA AGAPRPVDGA PPAPFVAKTY  180
EMVADPATDA VVSWGGPDGA GNTFVVWDPR ELAASLLPRF FKHANFASFV RQLNIYVSTN  240
SPASSSASAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00478.1.g00120.1.am.mk
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4407833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-25heat shock transcription factor A2