PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00480.1.g00100.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 429aa MW: 46822.9 Da PI: 8.9291

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00480.1.g00100.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.6	4.7e-12	121	152	2	33
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 +++k+ rr+++NReAAr+sR+RKka+i+ Le Zpz_sc00480.1.g00100.1.sm.mkhc 121 PSDKALRRLAQNREAARKSRLRKKAYIQALES 152 589***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.1E-5	120	183	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-7	121	157	No hit	No description
Pfam	PF00170	8.4E-9	122	152	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.62E-6	124	158	No hit	No description
PROSITE pattern	PS00036	0	127	142	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.4E-27	221	293	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MTSASVRRPP MGIYDYDRRA RQQPFPAWAG EPPFRADSVA AQAVATGAPP PAAVVGFVEP 60 EVKFVSRRGA NSSDNVSRTW NGTAGVLMAS VAVAEDDAPL ADSPGPPSSD SFGHDRDDAG 120 PSDKALRRLA QNREAARKSR LRKKAYIQAL ESSRLKLAWM EQELAAVRRP QVELELRIVQ 180 KKGAFVGGSV GESAPTLVDS GVAAFEMEYA RWMEEQARQA GELRAALQSD ASELHLRVLV 240 DAGLAHYDAL FGAKSAAARR DAFFVLSGAW RAPTERFFHW IGGFRPSEVL KTLEPQLEPL 300 AEQQREEVRA LQQTARQLED ALSQGLDKLQ QTLTEALLAT TTAIDAPHDG GGGYANVLPQ 360 QQMAGVFGRL DGLPGFVDQA DHMRQQTLRN MRKILAPRQA ARGLLALADY CQRLRALSSL 420 WAVRPREPA

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MTSASVRRPP MGIYDYDRRA RQQPFPAWAG EPPFRADSVA AQAVATGAPP PAAVVGFVEP  60
EVKFVSRRGA NSSDNVSRTW NGTAGVLMAS VAVAEDDAPL ADSPGPPSSD SFGHDRDDAG  120
PSDKALRRLA QNREAARKSR LRKKAYIQAL ESSRLKLAWM EQELAAVRRP QVELELRIVQ  180
KKGAFVGGSV GESAPTLVDS GVAAFEMEYA RWMEEQARQA GELRAALQSD ASELHLRVLV  240
DAGLAHYDAL FGAKSAAARR DAFFVLSGAW RAPTERFFHW IGGFRPSEVL KTLEPQLEPL  300
AEQQREEVRA LQQTARQLED ALSQGLDKLQ QTLTEALLAT TTAIDAPHDG GGGYANVLPQ  360
QQMAGVFGRL DGLPGFVDQA DHMRQQTLRN MRKILAPRQA ARGLLALADY CQRLRALSSL  420
WAVRPREPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00480.1.g00100.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034698	1e-37	BT034698.1 Zea mays full-length cDNA clone ZM_BFb0012B03 mRNA, complete cds.
GenBank	BT038664	1e-37	BT038664.1 Zea mays full-length cDNA clone ZM_BFb0304N24 mRNA, complete cds.
GenBank	EU956720	1e-37	EU956720.1 Zea mays clone 1571658 transcription factor TGA4 mRNA, complete cds.
GenBank	KJ727561	1e-37	KJ727561.1 Zea mays clone pUT5421 bZIP transcription factor (bZIP107) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445151.1	1e-136	transcription factor TGA6 isoform X2
Swissprot	Q93ZE2	1e-105	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A0A9HNG7	1e-148	A0A0A9HNG7_ARUDO; Uncharacterized protein
STRING	Sb07g004900.1	1e-135	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-103	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]