PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00491.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 252aa    MW: 27523.9 Da    PI: 4.3508
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00491.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-17545345
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                   W+ eEd +l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Zpz_sc00491.1.g00120.1.am.mk  5 IWSDEEDMILIQAHQEVGNK-WAEIAKRLP-GRTENSIKNHWN 45
                                  6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.018152IPR017930Myb domain
SMARTSM007171.6E-16250IPR001005SANT/Myb domain
SuperFamilySSF466894.88E-16353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-19646IPR009057Homeodomain-like
PfamPF002494.1E-16645IPR001005SANT/Myb domain
CDDcd001676.95E-15648No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MQKDIWSDEE DMILIQAHQE VGNKWAEIAK RLPGRTENSI KNHWNATKRR QFARRRSRAS  60
SKAPKSGTLL QSYIKSLGIG PSKTVETLLA QPPLSPSSSS PAPPGAKPAD FNDDGCPELE  120
PDQSNAPNVQ GILGAIHENS CGEAKPCEEL LGPICDGFLV DMGDGLFCTP EMAAFQVYSV  180
GDEVDGDFIF NHLDCPVKVD REEMCVDMAW VDDALGCVVE QGSCQSETMQ VIKKEVDLVE  240
MVAASQERTG QE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A1e-19151353MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A1e-19151353MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00491.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986186.33e-77transcription factor MYB115
TrEMBLA0A1E5V2V38e-87A0A1E5V2V3_9POAL; Transcription factor MYB98
STRINGPavir.J37434.1.p1e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-22myb domain protein 98