PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00495.1.g00340.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 173aa    MW: 18800.9 Da    PI: 10.1046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00495.1.g00340.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.2e-06135157830
                                     HHHHHHHHHHHHHHHHHCTSCCC CS
                             HLH   8 rErrRRdriNsafeeLrellPka 30 
                                      E +RR+riN+++  L+ l+P+ 
  Zpz_sc00495.1.g00340.1.sm.mkhc 135 TEPKRRERINERLKVLQNLVPNG 157
                                     6889*****************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-5119161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-5134160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MADPSLMLDL NLDFEDQDGG ELTAPCSKRK RALELEQKDE STTGIVPTRK KGRSTATPAP  60
KKGKTAKKAQ KGAPSIQGNN QEESNGDLQS SRNYLYSDED SQEMTACSNV SSASKKTSSS  120
SAGRAKARAD RGAATEPKRR ERINERLKVL QNLVPNGTKA SEIKPTIRSD GWF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00495.1.g00340.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796821.12e-43transcription factor bHLH54-like
TrEMBLA0A2S3IT636e-42A0A2S3IT63_9POAL; Uncharacterized protein
TrEMBLA0A2T7CG436e-42A0A2T7CG43_9POAL; Uncharacterized protein
STRINGPavir.Ia04640.1.p2e-42(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7412122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.16e-08ROOT HAIR DEFECTIVE 6-LIKE 2