PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00496.1.g00010.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 177aa MW: 19497.4 Da PI: 10.7756

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00496.1.g00010.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.7	8e-33	31	87	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ k+rkpylheSRh+hA+rR+Rg+gGrF Zpz_sc00496.1.g00010.1.sm.mkhc 31 EEPVYVNAKQYHGILRRRQSRAKAELEKKI-VKARKPYLHESRHQHAMRRARGNGGRF 87 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-36	29	90	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.689	30	90	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.7E-28	32	87	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.8E-25	33	55	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	35	55	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.8E-25	64	87	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MVGPYGTQPG TQFQLDGLTH SRMPLPLEIS EEPVYVNAKQ YHGILRRRQS RAKAELEKKI 60 VKARKPYLHE SRHQHAMRRA RGNGGRFLNT KKIDNGTPNG KADPKKGNAY TLETGIKCSS 120 IALPSTFCKA VQGWRPEQNA IWVQKPVPIL LVGGAGRPTA SSLSRIGSGP EIYGESL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-23	31	95	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00496.1.g00010.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021304143.1	3e-62	nuclear transcription factor Y subunit A-1-like
Refseq	XP_021304146.1	3e-62	nuclear transcription factor Y subunit A-1-like
Swissprot	Q945M9	8e-36	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A1B6QIQ6	6e-61	A0A1B6QIQ6_SORBI; Uncharacterized protein
STRING	Sb01g011220.2	1e-61	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8205	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	3e-38	nuclear factor Y, subunit A9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]