PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00497.1.g00180.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 305aa    MW: 33953.6 Da    PI: 9.1367
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00497.1.g00180.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.12e-103761226
                                    -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                    +++ C f++r+ tCkyG+ C+F H+
  Zpz_sc00497.1.g00180.1.sm.mkhc 37 GEKACAFYMRSRTCKYGEDCRFDHP 61
                                    7789********************8 PP
2zf-CCCH37.25e-1290114327
                                     S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                     ++ C+++ +tG Ck+G++C+F H++
  Zpz_sc00497.1.g00180.1.sm.mkhc  90 ERVCSYYEKTGKCKFGASCRFDHPK 114
                                     689********************96 PP
3zf-CCCH36.58.3e-12181205226
                                     -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                     ++  C+f+++tGtCky d+CkF+H+
  Zpz_sc00497.1.g00180.1.sm.mkhc 181 GETVCDFYMKTGTCKYTDKCKFHHP 205
                                     6789********************8 PP
4zf-CCCH38.61.8e-12237260427
                                     ---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                     e C f++++GtCk+G +C+F H+p
  Zpz_sc00497.1.g00180.1.sm.mkhc 237 EVCAFYMKSGTCKFGVQCRFDHPP 260
                                     78********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00153562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.313563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-53561IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-83761IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-687114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.67687115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-688115IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-990114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-691114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7178207IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7179206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549179207IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9181205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6184205IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6233260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263233261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6235262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5237260IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-10237260IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGSHSTVGQS EPLYSSNTMV KRPRLESNLT IYPRRPGEKA CAFYMRSRTC KYGEDCRFDH  60
PHWVPGGGIP NWREKPKSAD STALPVRPSE RVCSYYEKTG KCKFGASCRF DHPKENEMPT  120
LIGRQTIYTA TIDAEVCNVS TDGSTPEKKH TPAGPAEAHN TKGLPIRPGE PEPITYPQRP  180
GETVCDFYMK TGTCKYTDKC KFHHPIDRSV PRPNESWDPQ QTVILTTAGL PRREDAEVCA  240
FYMKSGTCKF GVQCRFDHPP PEEAISRLKA AGGKKGAKKA AKLMAAARKQ DEKKSEGLSI  300
VLDKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00497.1.g00180.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020397512.11e-103uncharacterized protein LOC100216717 isoform X2
SwissprotQ5ZDJ61e-72C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A1D6NMC31e-103A0A1D6NMC3_MAIZE; Zinc finger CCCH domain-containing protein 37
STRINGXP_008798450.12e-86(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-61floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]