PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00501.1.g00210.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 294aa    MW: 31798.1 Da    PI: 8.2922
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00501.1.g00210.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.6e-11132158127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++++ C +++rtG C++G +CkF+H+p
  Zpz_sc00501.1.g00210.1.am.mkhc 132 PGEPDCTYYLRTGLCRFGMTCKFNHPP 158
                                     5789*********************97 PP
2zf-CCCH43.36.2e-14228254127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     +++elC+f++r+G+Ck+G++CkF H++
  Zpz_sc00501.1.g00210.1.am.mkhc 228 PGEELCKFYSRYGICKFGANCKFDHPM 254
                                     689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.521131159IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5131158IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8133158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5136159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591227255IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8227254IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-11229254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6229254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5231252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRSPALGDAY KGHGEIVRPP PLAILLLCTD HSLPCPLPGR SSGWQQLRPP PPRSRDGRRR  60
SHSLPMEDAG RESAPAAVTV SAVPAPPQPC TTNAATDTSS PDPSALYEEE MWQQMAMDSS  120
ATMQPGPYPE RPGEPDCTYY LRTGLCRFGM TCKFNHPPDR NLAIASARMK GEYPERVGHP  180
ECQSQLQSPG AQQTYGPSQQ VCKFHHPRVR TLPPPDCVLS PMGLPLRPGE ELCKFYSRYG  240
ICKFGANCKF DHPMAAPIGV YAYGFNASVS ASASTNVAGV RRLLGSPSGS GYTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00501.1.g00210.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370353e-91BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds.
GenBankEU9653993e-91EU965399.1 Zea mays clone 285780 zinc finger CCCH type domain-containing protein ZFN-like 2 mRNA, complete cds.
GenBankJX4284673e-91JX428467.1 Zea mays subsp. mays clone pUT3062 C3H49 C3H type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.11e-79zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB56e-67C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A3B6EPJ42e-88A0A3B6EPJ4_WHEAT; Uncharacterized protein
TrEMBLA0A446NZV32e-88A0A446NZV3_TRITD; Uncharacterized protein
STRINGSi001558m4e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17256611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.19e-51zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]