PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00511.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 198aa    MW: 21186 Da    PI: 9.0214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00511.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.5e-081261651554
                                   HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   +iN+ +++L++llP+a + ++   s    L++++ YIksL
  Zpz_sc00511.1.g00010.1.am.mk 126 EINELISRLQTLLPSARRRGGNQASTTKLLKETCSYIKSL 165
                                   7**************86667777****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.134111165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.85E-5125169No hitNo description
Gene3DG3DSA:4.10.280.103.3E-8125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-9125187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-5126165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MLTPGLGTWQ VEGEVGTQPQ LITRPPTAGA RGHPQLRAGE GHLDPTDPNF LCRSGQAAAA  60
PCVSVLAAPP CRVSRAPAAA YQNNLPAPSV LDLVGAPRRT TFAFSSPTTT TTMSSRRSRG  120
GVSEEEINEL ISRLQTLLPS ARRRGGNQAS TTKLLKETCS YIKSLHREVD DLSDRLSDLM  180
ATMDQNSPGA EIIRSLLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00511.1.g00010.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581592e-89EU958159.1 Zea mays clone 1675661 DNA binding protein mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.17e-27bHLH family protein