PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00521.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 86aa    MW: 9688.09 Da    PI: 10.828
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00521.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF916e-293483251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss
  Zpz_sc00521.1.g00010.1.am.mk 34 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 83
                                  9***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.14E-272585IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.022585IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-362584IPR002100Transcription factor, MADS-box
CDDcd002651.16E-352685No hitNo description
PRINTSPR004045.9E-302747IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002781IPR002100Transcription factor, MADS-box
PfamPF003191.3E-263481IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-304762IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-306283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MLAEGPTDRF GEGDRRRGEQ DRSGMGRGKV VLQRIENKIS RQVTFAKRRN GLLKKAYELS  60
ILCDAEVALV LFSHAGRLYQ FSSSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-202584160Myocyte-specific enhancer factor 2B
1tqe_Q3e-202584160Myocyte-specific enhancer factor 2B
1tqe_R3e-202584160Myocyte-specific enhancer factor 2B
1tqe_S3e-202584160Myocyte-specific enhancer factor 2B
6c9l_A3e-202584160Myocyte-specific enhancer factor 2B
6c9l_B3e-202584160Myocyte-specific enhancer factor 2B
6c9l_C3e-202584160Myocyte-specific enhancer factor 2B
6c9l_D3e-202584160Myocyte-specific enhancer factor 2B
6c9l_E3e-202584160Myocyte-specific enhancer factor 2B
6c9l_F3e-202584160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00521.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424068e-90BT042406.1 Zea mays full-length cDNA clone ZM_BFb0221D10 mRNA, complete cds.
GenBankEU9617998e-90EU961799.1 Zea mays clone 238290 MADS-box transcription factor 34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981738.18e-36MADS-box transcription factor 34
RefseqXP_004981739.18e-36MADS-box transcription factor 34
RefseqXP_025796987.19e-36MADS-box transcription factor 34-like
RefseqXP_025796988.19e-36MADS-box transcription factor 34-like
SwissprotQ6Q9H61e-36MAD34_ORYSJ; MADS-box transcription factor 34
TrEMBLA0A1D6L4W93e-35A0A1D6L4W9_MAIZE; MADS24
TrEMBLA0A3L6EFY61e-35A0A3L6EFY6_MAIZE; MADS-box transcription factor 34
TrEMBLQ84KI22e-35Q84KI2_SORBI; MADS box protein AGLG1 (Fragment)
STRINGSi037197m3e-35(Setaria italica)
STRINGSb01g007780.11e-35(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-31MIKC_MADS family protein
Publications ? help Back to Top
  1. Kobayashi K,Maekawa M,Miyao A,Hirochika H,Kyozuka J
    PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice.
    Plant Cell Physiol., 2010. 51(1): p. 47-57
    [PMID:19933267]
  2. Gao X, et al.
    The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development.
    Plant Physiol., 2010. 153(2): p. 728-40
    [PMID:20395452]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]
  4. Lin X, et al.
    The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas.
    New Phytol., 2014. 202(2): p. 689-702
    [PMID:24372518]
  5. Conrad LJ, et al.
    The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice.
    Plant J., 2014. 80(5): p. 883-94
    [PMID:25279942]
  6. Liu M,Li H,Su Y,Li W,Shi C
    G1/ELE Functions in the Development of Rice Lemmas in Addition to Determining Identities of Empty Glumes.
    Front Plant Sci, 2016. 7: p. 1006
    [PMID:27462334]