PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00523.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 583aa MW: 62441 Da PI: 10.7689

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00523.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00087	208	230	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C + F ++ L H++ H Zpz_sc00523.1.g00020.1.am.mk 208 FACHYCRRQFYSSQALGGHQNAH 230 78*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.24E-5	206	235	No hit	No description
PROSITE profile	PS50157	11.136	208	235	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	210	230	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MQRIAIVSSV VLLASVSGLQ SAADTELVAA ANHVGEGLRV LTPTTACLLL LLLLLIRNLS 60 RLPDLRVLRE RRGWWQWSAA TASRSPLTGS AGTADRQSGD SIHILILGAQ HLPHRSRDVR 120 AETVDQAGKE GRREKRLIGG GNGHRGQLDA AKVELDLLGG MVGSVVDFHP AAVRDVADQS 180 SSLPVLLDLV PPDQPPSTAA GLDPPQLFAC HYCRRQFYSS QALGGHQNAH KRERTLARRR 240 GEVAPRPFGG LLVQGSPTPF AVHGASLVTA PALGWVRAVM NSRAPAGGYA DRRVDGGGEE 300 LPKLDLTLKL NCAGVGLSSS RRGGAGYGAM GLALSATNAA MAAPPCVSAV SSLHSPDLFG 360 KATAPLSGRR PFLGIRSVDR TNKQTNSADR RAPPLSAPTQ AAASLTGLDA KRVKKDSLGI 420 SAEASLRVNE RDETAGGLAA PCMMDGWVEA FGTGRTDGQM RARERKKVRP REQVHAVLRA 480 ESFPWPRRNP LVNSDKALAV PSRSGWTTKR FRRQIKDAKD SNAFVTLLSF CSVPGPSFNC 540 TLYCYSSHHS PDAEADEDSA RFFFFYRAVR TAQLLRAEGN RRA

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MQRIAIVSSV VLLASVSGLQ SAADTELVAA ANHVGEGLRV LTPTTACLLL LLLLLIRNLS  60
RLPDLRVLRE RRGWWQWSAA TASRSPLTGS AGTADRQSGD SIHILILGAQ HLPHRSRDVR  120
AETVDQAGKE GRREKRLIGG GNGHRGQLDA AKVELDLLGG MVGSVVDFHP AAVRDVADQS  180
SSLPVLLDLV PPDQPPSTAA GLDPPQLFAC HYCRRQFYSS QALGGHQNAH KRERTLARRR  240
GEVAPRPFGG LLVQGSPTPF AVHGASLVTA PALGWVRAVM NSRAPAGGYA DRRVDGGGEE  300
LPKLDLTLKL NCAGVGLSSS RRGGAGYGAM GLALSATNAA MAAPPCVSAV SSLHSPDLFG  360
KATAPLSGRR PFLGIRSVDR TNKQTNSADR RAPPLSAPTQ AAASLTGLDA KRVKKDSLGI  420
SAEASLRVNE RDETAGGLAA PCMMDGWVEA FGTGRTDGQM RARERKKVRP REQVHAVLRA  480
ESFPWPRRNP LVNSDKALAV PSRSGWTTKR FRRQIKDAKD SNAFVTLLSF CSVPGPSFNC  540
TLYCYSSHHS PDAEADEDSA RFFFFYRAVR TAQLLRAEGN RRA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00523.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004087	2e-42	AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09.
GenBank	AP014958	2e-42	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	2e-42	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBank	CT835407	2e-42	CT835407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122P15, full insert sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	9e-16	zinc finger protein 2