PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00537.1.g00120.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 175aa    MW: 19244 Da    PI: 10.3671
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00537.1.g00120.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.2e-092169346
                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                    rW +eE+  l+ +v+++G g W++I +         +R+  ++k++w++
  Zpz_sc00537.1.g00120.1.sm.mkhc 21 RWAPEEEASLKAGVAKHGVGKWRAILNDPEfgptlCHRSNVDLKDKWRN 69
                                    9**************************9999999999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.5731475IPR017930Myb domain
SuperFamilySSF466897.43E-151777IPR009057Homeodomain-like
SMARTSM007177.3E-61873IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-131970IPR009057Homeodomain-like
CDDcd116603.03E-202071No hitNo description
PfamPF002491.0E-62170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.101.4E-5136171IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
LYLCCIRQRT LGLSMGGPKH RWAPEEEASL KAGVAKHGVG KWRAILNDPE FGPTLCHRSN  60
VDLKDKWRNM NINAIASGSR EKGRAAPKKA QSILNKGNHT KAISKFTSYS NDKTVDEMPI  120
QAAPSEALNT SNPMKPQSRL ENIVMEAIKN LSEPMGSTQI AIGNYIQSRR QSAAC
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00537.1.g00120.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796390.17e-61single myb histone 6 isoform X2
SwissprotC0HIA36e-59SMH6_MAIZE; Single myb histone 6
TrEMBLK4ACJ71e-64K4ACJ7_SETIT; Uncharacterized protein
STRINGSi036471m6e-65(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7064322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.35e-39telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]