PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00540.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 195aa    MW: 21461.1 Da    PI: 8.7819
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00540.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-1991125135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++
  Zpz_sc00540.1.g00030.1.am.mk  91 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 125
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.84885121IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-1585138IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-1388127No hitNo description
Gene3DG3DSA:3.30.50.105.5E-1688138IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.33E-1390126No hitNo description
PfamPF003203.1E-1791125IPR000679Zinc finger, GATA-type
PROSITE patternPS00344091116IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MISFSDDDGT CRSKSEFTHK QSFHRRSETP RRLFSPPSVI PTSLPAAEPR KDPPAVDREP  60
PTDHPAPPPP MASADHKIAG IGVPEEGRRS CVECRATTTP MWRSGPTGPR SLCNACGIRY  120
RKKRRQELGL DQKQVQQQHQ GEIKTEVKES NSNSSSGSSN NLEVVQERKL LMGVEEAAFL  180
LMTLSSSSTS TLLHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00540.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310786.19e-57GATA transcription factor 23-like
TrEMBLA0A2T7DM744e-56A0A2T7DM74_9POAL; Uncharacterized protein
STRINGSb03g013700.14e-56(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.15e-18GATA transcription factor 23