PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00543.1.g00290.1.es.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 216aa MW: 25626.3 Da PI: 7.0451

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00543.1.g00290.1.es.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	198	5.7e-61	2	209	165	374
GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243 L+++A++++vpfef++ +a+r e++++e+L+++++E l+Vn+ ++ ++l+desv es+r+ vL+++++++P+++++ Zpz_sc00543.1.g00290.1.es.mkhc 2 LKDYAQTFNVPFEFQA-IASRYEAVQIEDLHIEKDELLIVNCLFRFETLMDESVVAESPRNMVLNTIRKMNPHLFIHGI 79 899***********.7********************************************************* PP GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 + ++n++ F+ rf eal+ ysa+fd+l++++pr++e+r +E +l+gre+ nv++ceg er+er e +++W+ r ++a Zpz_sc00543.1.g00290.1.es.mkhc 80 VNGSYNAPFFMSRFREALYQYSAIFDMLDTNIPRDNEQRLLIESALFGREAINVISCEGLERQERPEIYKQWQVRNQRA 158 *************************************************************************** PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 GFk++p+++ ++k +r +++d + ++e++ +l+lgWk+r ++++S W+ Zpz_sc00543.1.g00290.1.es.mkhc 159 GFKQLPVNQGIMKRSWEKVRCYHKD-FVIDEDNRWLLLGWKGRIILALSTWK 209 *******************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.936	1	190	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-58	2	209	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
YLKDYAQTFN VPFEFQAIAS RYEAVQIEDL HIEKDELLIV NCLFRFETLM DESVVAESPR 60 NMVLNTIRKM NPHLFIHGIV NGSYNAPFFM SRFREALYQY SAIFDMLDTN IPRDNEQRLL 120 IESALFGREA INVISCEGLE RQERPEIYKQ WQVRNQRAGF KQLPVNQGIM KRSWEKVRCY 180 HKDFVIDEDN RWLLLGWKGR IILALSTWKP DHRSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-17	2	210	179	380	Protein SCARECROW
5b3h_A	2e-17	2	210	178	379	Protein SCARECROW
5b3h_D	2e-17	2	210	178	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00543.1.g00290.1.es.mkhc

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456620.1	1e-141	scarecrow-like protein 9
Swissprot	O80933	3e-91	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A0A9DR93	1e-146	A0A0A9DR93_ARUDO; Uncharacterized protein
TrEMBL	A0A3L6SH50	1e-140	A0A3L6SH50_PANMI; Scarecrow-like protein 9
STRING	Sb03g039510.1	1e-140	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22289	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-93	GRAS family protein