PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00544.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 328aa    MW: 34711 Da    PI: 7.8965
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00544.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.5e-10103138338
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                                     +WT+eE+ l++ + ++lG+g+W+ I+r +   Rt+ 
  Zpz_sc00544.1.g00060.1.sm.mkhc 103 PWTEEEHRLFLMGLQKLGKGDWRGISRNFVVSRTPT 138
                                     8***************************99888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.862320IPR001878Zinc finger, CCHC-type
PROSITE profilePS512949.25396149IPR017930Myb domain
SuperFamilySSF466892.69E-898144IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-999139IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.9E-11100139IPR009057Homeodomain-like
CDDcd001672.08E-7103139No hitNo description
PfamPF002491.8E-7103139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTRRCSRCSN NGHNARTCPD RSGGGGVRLF GVRLTSAPAP AALKKSASMS CIASSLGGGS  60
GGSSPPAGGP GVGRGEGEGY VSDDPVHASC SANGRAERKK GTPWTEEEHR LFLMGLQKLG  120
KGDWRGISRN FVVSRTPTQP MEEYPISAEQ FPCENNQDEA TSSNHLPSLH VGLQKEAEFA  180
AQLPTLQSRQ HEGSEFAEPS LPLADMEMNP SVPFNAITAS TVPAFHPALP PVPLTLWPPN  240
IANMEDTGTP HEILRPTPLK GKEVAKADNI AGMAKLRIGE AASGSMEPTA LSLQLIGSMD  300
TRQSAFHASP PRTRPDLSKR NSSPIHAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00544.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455032.11e-164transcription factor MYBS3
TrEMBLC5XM041e-163C5XM04_SORBI; Uncharacterized protein
STRINGSb03g003270.11e-163(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.12e-43MYB_related family protein