PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00550.1.g00300.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 268aa    MW: 29148.9 Da    PI: 11.8487
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00550.1.g00300.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.1e-0844751748
                                  HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +++G g+W++     g+ R++k+c++rw ++l
  Zpz_sc00550.1.g00300.1.am.mk 44 AEHGEGNWNRLRDNAGLDRCGKSCRLRWTNHL 75
                                  68***************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001675.74E-54475No hitNo description
Gene3DG3DSA:1.10.10.603.5E-134482IPR009057Homeodomain-like
PfamPF002492.5E-64475IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-1544104IPR009057Homeodomain-like
PROSITE profilePS500906.5164575IPR017877Myb-like domain
PROSITE profilePS500904.676103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-983117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MKQHNRTSIR GLASSGGRLV AGRTSGAARE QSGGVGYQRL SEAAEHGEGN WNRLRDNAGL  60
DRCGKSCRLR WTNHLKPGLR KGPFDKEEVD KILRMHKKWG NKWASQFLQP ASTFPSRING  120
FCSFRDLIHG CFLLSLPPDL RFQIDFGLPW NARSVRNERV VVPRGHTCWA APSARRTATG  180
RRDAITGRQT GARRSRTISR AAVSVAAHVI GYPVGRSRST GLLSASAARR SHLGHESGPP  240
GTGSILTDAA PASTEPKGKE KAVLDSNA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00550.1.g00300.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4608633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.11e-21myb domain protein 65