PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00554.1.g00010.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 234aa    MW: 25269.8 Da    PI: 10.2219
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00554.1.g00010.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.8e-12556147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                                    +++WT+eE++ l ++v ++G g W+tI +          R+  ++k++w+++
  Zpz_sc00554.1.g00010.1.am.mkhc  5 KQKWTQEEEDALRRGVLKHGAGKWRTIQKDPEfsptlSSRSNIDLKDKWRNL 56
                                    79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.329160IPR017930Myb domain
SuperFamilySSF466891.44E-15258IPR009057Homeodomain-like
SMARTSM007174.6E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-14556IPR009057Homeodomain-like
PfamPF002491.1E-8556IPR001005SANT/Myb domain
CDDcd116605.00E-20656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGAPKQKWTQ EEEDALRRGV LKHGAGKWRT IQKDPEFSPT LSSRSNIDLK DKWRNLSFSA  60
GQGSREKTRV PKITGPSSSA LPAPQALLLR ASNKIAEASA PADAEKKSQD GKASPKFVDN  120
KFYKVTDSFA TKTPALVKAS TKKQKDPSKP LKASKNLGIF AAVSPALEAA AAAAAKVADA  180
EAKAHLAHEH MMEADRILKM AEETESLLTL AAEIYDRCSS GEIITVNPVS QKEF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00554.1.g00010.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105225.14e-96single myb histone 3
RefseqXP_025815372.12e-92glycylpeptide N-tetradecanoyltransferase 1
SwissprotQ6WLH43e-97SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0A9PJS41e-106A0A0A9PJS4_ARUDO; Smh4
STRINGPavir.Ea02570.1.p6e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-30telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]