PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00556.1.g00150.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 405aa    MW: 44111.2 Da    PI: 5.2181
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00556.1.g00150.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.81.4e-054688338
                        zf-B_box  3 erkCpeHeeke.lqlfCedCqqllCedClleeHkg.......Ht 38
                                    e +C++++    +  +C+ +   lC +C  + H g       H 
  Zpz_sc00556.1.g00150.1.sm.mkhc 46 EANCDNCDGPAlAAVYCRADAARLCLTCDRHVH-GangvcsrHA 88
                                    789*****9555*******************99.4355666665 PP
2CCT60.27e-21362404345
                             CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                                       ++RYkeKrktR+F+K++rYesRK++A+ R R+KGrF+k+++
  Zpz_sc00556.1.g00150.1.sm.mkhc 362 SVISRYKEKRKTRRFDKQVRYESRKVRADGRLRIKGRFAKAKQ 404
                                     5689************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-94492IPR000315B-box-type zinc finger
PROSITE profilePS501199.8264492IPR000315B-box-type zinc finger
CDDcd000217.06E-54992No hitNo description
PROSITE profilePS5101714.743360402IPR010402CCT domain
PfamPF062031.6E-15361402IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDQAEQRDRQ QLVVATEPEP PGEEEALKKA LPREADAEEA GAEPDEANCD NCDGPALAAV  60
YCRADAARLC LTCDRHVHGA NGVCSRHARA PLCAHCRAAG AVFRRASAGG LFLCSDCDFG  120
KQRRDGAGEP ALHDRCAVQP YTGCPPASEL AALLGVPLFD KPVGADGDGW WNFWEEPQVM  180
SLEDLIVPTT PYHDFQPLLN PSSPKNRSIS PDAKMNEEIL RQLGELAEAD SGVQAPAPTG  240
HNEVELTGDQ FLTWAPPAQN NFSTHEIATM PTPGFENGRW NSNDYHDLNG ACKVELSYER  300
NPLSSAEGCL SSFVQISEIC PSMTNGSGME DNQQANPGVG VPGQAVPKRS GFDVVPCPDR  360
GSVISRYKEK RKTRRFDKQV RYESRKVRAD GRLRIKGRFA KAKQI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00556.1.g00150.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793690.10.0zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A1E5UIB60.0A0A1E5UIB6_9POAL; Uncharacterized protein
STRINGPavir.Ia03698.1.p0.0(Panicum virgatum)
STRINGPavir.J26263.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.17e-45B-box type zinc finger protein with CCT domain