PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00563.1.g00330.1.es.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LSD

Protein Properties

Length: 176aa MW: 18423.5 Da PI: 8.493

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00563.1.g00330.1.es.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.8	1.7e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGApsV+Ca C+tV Zpz_sc00563.1.g00330.1.es.mkhc 7 CNGCRSLLLYPRGAPSVCCAACHTV 31 ************************9 PP
2	zf-LSD1	33.4	7.5e-11	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL Y+ +A+ VRC++CdtV Zpz_sc00563.1.g00330.1.es.mkhc 46 CGGCQTLLVYTCNATTVRCSCCDTV 70 ************************9 PP
3	zf-LSD1	48.8	1.2e-15	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C+t+L+YP+GApsV+Ca+C++V Zpz_sc00563.1.g00330.1.es.mkhc 84 CAQCQTVLMYPYGAPSVKCAICNFV 108 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	6.9E-12	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.1E-11	7	31	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	6.7E-10	44	73	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-8	46	70	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.2E-11	81	110	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.2E-13	84	108	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MQGQIVCNGC RSLLLYPRGA PSVCCAACHT VTRVPPPGMD MARLICGGCQ TLLVYTCNAT 60 TVRCSCCDTV NLVRQVSSIA HVNCAQCQTV LMYPYGAPSV KCAICNFVTN IGVTTLRPFP 120 PAIPAPSANS YNVPSTSVPT NRSQNVTVVV ENPMTVGENG KLVSNIVVGV ATGGKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00563.1.g00330.1.es.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805781.1	1e-103	protein LOL2-like isoform X2
Swissprot	Q2QMB3	2e-89	LOL2_ORYSJ; Protein LOL2
TrEMBL	A0A0A9MMP5	1e-102	A0A0A9MMP5_ARUDO; Uncharacterized protein
STRING	Sb08g021100.1	1e-98	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	5e-53	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wu J, et al. OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. Plant J., 2014. 80(6): p. 1118-30 [PMID:25353370]