PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00591.1.g00190.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 539aa    MW: 59421.1 Da    PI: 10.3451
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00591.1.g00190.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.34.8e-31296400199
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                   f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++g
  Zpz_sc00591.1.g00190.1.am.mk 296 FDKVVTPSDVGKLNRLVIPKQHAEKYfplgSAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVITKGWSRFVKEKRLDAG 376
                                   89***************************955556888******************************************* PP

                                   -EEEEEE-.SS.SEE..EEEEE-S CS
                            B3  78 DfvvFkld.gr.sefelvvkvfrk 99 
                                   D+v F +  g+  +++l++ ++r+
  Zpz_sc00591.1.g00190.1.am.mk 377 DTVSFGRGvGEhARGRLFIDWRRR 400
                                   ******655888999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-40290406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-28293403IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-25294381No hitNo description
PfamPF023627.2E-28296400IPR003340B3 DNA binding domain
SMARTSM010194.5E-21296401IPR003340B3 DNA binding domain
PROSITE profilePS5086314.452296401IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDSHEFFTRA TEVAVRCPAN LAKATNVLPR AIALCAVTIR FLGCYSFRRR CKRRERDGAV  60
ALPAVETQKI QVMGTATTAI ELHGSHGGTH HGRGPHFRFR SHTACLVRVK TYRWREIDHS  120
ELAQERDTKP IPAARGSCSS GINSLLELIF SPSGGLGQGS LVWRDADSSL MSSRLFRRRQ  180
EETLASQVAS RLGEFEVKRD DLARGIGEAQ QLGIRSAYFH LLHSGGAHHS EGYCYFQPPN  240
GRERATKEAS ERPTNLCGLA PSLLMTTELT AGPIRSGGGG GGGDDAAVAV EKEHMFDKVV  300
TPSDVGKLNR LVIPKQHAEK YFPLGSAANE KGLLLSFEDR TGKPWRFRYS YWNSSQSYVI  360
TKGWSRFVKE KRLDAGDTVS FGRGVGEHAR GRLFIDWRRR PEPPAPYYHH RLAIPSSLPF  420
APWARAHYPA GIGGAGRTVL HLPPSPSSLY DSHRRRHDVY TPSTRQVLLY RPHQQQQATV  480
VQESGLVRTP TSTPGQAEPP SVESSGSKRL RLFGVNLDCA AGSEEGKGKG RRSAPPQPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-602914023115B3 domain-containing transcription factor NGA1
5os9_B4e-602914023115B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00591.1.g00190.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666011e-132AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798126.11e-122B3 domain-containing protein Os03g0120900-like
TrEMBLA0A1E5W4M91e-125A0A1E5W4M9_9POAL; B3 domain-containing protein
STRINGPavir.Ia04549.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-65B3 family protein