PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00593.1.g00090.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 457aa    MW: 48540.6 Da    PI: 9.6694
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00593.1.g00090.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-1769158299
                                   EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   fkv  p+ +    rl +p  f  e+ ++    ++ ++l+ +sg +W+v l  + +s++  +t+GWkeF+ ++ L +g f+v
  Zpz_sc00593.1.g00090.1.sm.mk  69 FKVYFPEQS--AVRLKIPPAFH-EYvKEA--PDRVVSLKGPSGHTWKVVL--TSGSQGLSFTQGWKEFACDHSLLAGHFMV 142
                                   555544433..34799*****8.562444..3458***************..***************************** PP

                                   EEE-SSSEE..EEEEE-S CS
                            B3  82 Fkldgrsefelvvkvfrk 99 
                                   F++dg+sef   v vf++
  Zpz_sc00593.1.g00090.1.sm.mk 143 FTYDGQSEF--SVDVFSA 158
                                   ****99999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.99966159IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-2166159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-1967159IPR015300DNA-binding pseudobarrel domain
CDDcd100178.43E-1668157No hitNo description
SMARTSM010193.6E-1468159IPR003340B3 DNA binding domain
PfamPF023627.5E-1577158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGRKNPQGGS GAAPAAAATE RGKGKRTEEG SAGRKERRSG REQRKVTEAA REEEEEEGGA  60
PVAAGEQFFK VYFPEQSAVR LKIPPAFHEY VKEAPDRVVS LKGPSGHTWK VVLTSGSQGL  120
SFTQGWKEFA CDHSLLAGHF MVFTYDGQSE FSVDVFSASG IKDKAAPNVE PRKEPVIKQE  180
EEQDCVVDMD ALDTPEVSAD LPPVEVDRRN TRKRVRQMND AMESDTALKT KGQSSAQKKH  240
EKRKPKAAAG TSSAVPTVSD SNKGSCNYEV GGDWQSWKGI APAPTVSCMI GAVLGFLVLL  300
TRNSFLSSLS ISSKLHLRGR TTLPSYARSK RPTRFFSASP PAKTTSSLSH ASSSVVIAGG  360
PPVSMRGLSG HSGGTLASSS LKSSHNISIL SSSSSSPPVA TTAANHGGGE LPRPSFPGNA  420
AWSSLHCCAA RTVEKVKSST LPAELQLMVF PCGVDVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00593.1.g00090.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-16B3 family protein