PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00606.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 392aa    MW: 42214.5 Da    PI: 7.2768
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00606.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.91.5e-1462143286
                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessst 78 
                                   W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++  + g++++pk   qCk++++ l+k+yk +k+   +       +
  Zpz_sc00606.1.g00060.1.am.mk  62 WSDGATSALIDAWGERFVALGRGSLRHPQWQEVAEVVsCRDGYSKTPKsdaQCKNRIDTLKKKYKVEKAKHDS-------S 135
                                   *************************************757788887755559**************9998886.......5 PP

                      trihelix  79 cpyfdqle 86 
                                   + yf++l+
  Zpz_sc00606.1.g00060.1.am.mk 136 WTYFHRLD 143
                                   ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-2260145No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDDDAEASPS PSPSPSRSPS PLPVADPVTV ASAPPGHIAV AIPLRKPSPS SGGGSGGRED  60
AWSDGATSAL IDAWGERFVA LGRGSLRHPQ WQEVAEVVSC RDGYSKTPKS DAQCKNRIDT  120
LKKKYKVEKA KHDSSWTYFH RLDELLAPIY KPGSGSSSGA RSAPPMVPPR FSFPQRTRTP  180
LQLPAVAKRR IPSPPTQPSA SSGSSDGFPP EPPSATVANG KKPRVEEPAP ANGAESNNRA  240
QSLRELAQAI RRFGEVYERI ESSKREQELR MERERLEAAR ELGDQGVQFF LKMQMELSKA  300
TDGAPSATPM AAATAIDGNG SRRAAMATDV ATSSNHKVRY RSKDSRHPHT AQQPQYQHSQ  360
NNSGAAAPAS GNSSDTENKE DEDMEDEDEE SQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00606.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650911e-134EU965091.1 Zea mays clone 283747 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170546.11e-154uncharacterized protein LOC100384564
TrEMBLA0A0E0K1B11e-154A0A0E0K1B1_ORYPU; Uncharacterized protein
TrEMBLA0A3L6EM851e-155A0A3L6EM85_MAIZE; Trihelix transcription factor ASIL2
STRINGPavir.J27535.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.19e-32sequence-specific DNA binding transcription factors