PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00620.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 261aa    MW: 29650.8 Da    PI: 9.6212
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00620.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-1414673689
                                  EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                            B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                                  l +ed++ + W ++++++ +s++yv+t+ W +Fvk+++L++gD+v F+  g++ 
  Zpz_sc00620.1.g00120.1.am.mk 14 LNFEDSTEKLWHFRYSFWWSSQSYVFTREWAKFVKEKRLNDGDIVSFYQRGNDA 67
                                  7899********************************************555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.869180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-17979IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-111467IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-131470IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-101668No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSSVAISEDG ASFLNFEDST EKLWHFRYSF WWSSQSYVFT REWAKFVKEK RLNDGDIVSF  60
YQRGNDATSI NHRFIFFKKQ DHGSSVPHHV PPTFNIPFGT LNDNWLFKAF GSTGHYRASL  120
AHKHLSYGYL AAEKCRKTRS SPVSWLTCWI HREAALPAPL RLVCRLGPLP TDGHDLDALA  180
DGQIDRTHDP CLGAYGRRNM ALGLGLEPRT RGETAAKLKS IFTGSPIIRC SQAGVMMLFF  240
GNLGFCRLVW ASSFDFRAIF R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-1578040113B3 domain-containing transcription factor NGA1
5os9_B6e-1578040113B3 domain-containing transcription factor NGA1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00620.1.g00120.1.am.mk
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.15e-17B3 family protein