PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00628.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 568aa    MW: 61142.4 Da    PI: 10.3198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00628.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-19101151256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ +l+ge
  Zpz_sc00628.1.g00040.1.am.mk 101 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAHRLRGE 151
                                   59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-25100158No hitNo description
Gene3DG3DSA:3.30.730.101.9E-29101158IPR001471AP2/ERF domain
SMARTSM003801.1E-31101164IPR001471AP2/ERF domain
PROSITE profilePS5103222.695101158IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-21101158IPR016177DNA-binding domain
PfamPF008471.1E-12102151IPR001471AP2/ERF domain
PRINTSPR003677.1E-9102113IPR001471AP2/ERF domain
PRINTSPR003677.1E-9124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDASLRTLPP GSSFPGEVRS AVSSLLLSPG GASALDTVFS HLPPPVAIPP LGSSVYYRQC  60
ELLRHFAASQ PHPTTACSSS SSSAATFQPT GDETALRGQK LYRGVRQRQW GKWVAEIRLP  120
QNRVRVWLGT YDSPETAAHA YDRAAHRLRG EYARLNFPGV MDGRGCPENL RQLRDAVDAK  180
IQAIRARLAR KRARARKQRE EQGKQLPARS EGANQAPPAT TTAARPVLSE GATTTSETTT  240
TTTTTPYGSP DGVLSVSAAS ADGELPLEHM PSFDPELIWE GRAEQRTQAW ARKQREDFAR  300
VSRSRQESPS NNCSVSLKSA PERTNATRAL ARDGYSFLLR VTVQQMEGAP PPPPPASSSP  360
SHPSPLPRTK NNWQRRLWIK PTRRDIAAYA SAIWLDSGRR VESEAAEQLP AEGERLGLEE  420
PERVGAAHGA DLLLDAAGDG AADQRDDAHL LAAALPAASV TPSADRSTAT LALMKCRHSR  480
RTRAPAIGVV AFVTNPSRHV SQYTEPSTKK SLSRTASTSP AAAITSAVII TDHPAAAVVN  540
RTPKGVMTSG PVGRLIWPET ESNGSHPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-17100158463ATERF1
3gcc_A4e-17100158463ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188194ARKRARA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00628.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389881e-122BT038988.1 Zea mays full-length cDNA clone ZM_BFb0347O12 mRNA, complete cds.
GenBankKJ7275021e-122KJ727502.1 Zea mays clone pUT5361 AP2-EREBP transcription factor (EREB34) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.17e-29ERF family protein