PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00632.1.g00040.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 193aa MW: 20307.1 Da PI: 10.5254

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00632.1.g00040.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.6	4.7e-34	41	123	3	92
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssa 82 +k + ++++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++s+a +c ss s+ Zpz_sc00632.1.g00040.1.sm.mk 41 KKPSGSKDRHSKVNGRGRRVRVPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTSPAvFSC---SSAPST 118 5666789********************************************************999995444...222222 PP TCP 83 snsssgkaak 92 s+s ++ Zpz_sc00632.1.g00040.1.sm.mk 119 SSS-----SR 123 211.....11 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-29	45	134	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.886	46	100	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MASREHAAAT FHQVYQPTPA PMSLAALAPT DAAVAMAPAR KKPSGSKDRH SKVNGRGRRV 60 RVPIVCAARV FQLTRELGLK SDGQTVEWLL RQAEPSILAA TGSGTSPAVF SCSSAPSTSS 120 SSRSLLLGKR PRQDVDEAPP PLWAAMQARP VGVAWGLSTP AQEQAYASAA QGHCLNLLSV 180 LSGTTKPAEE ESR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00632.1.g00040.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU967480	7e-77	EU967480.1 Zea mays clone 303582 TCP-domain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976294.1	4e-65	transcription factor PCF1
TrEMBL	A0A0A9DEW8	2e-82	A0A0A9DEW8_ARUDO; Uncharacterized protein
STRING	Traes_2BL_4B6057E06.1	5e-69	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	4e-36	TCP family protein