PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00636.1.g00160.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 309aa    MW: 33163.9 Da    PI: 7.5304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00636.1.g00160.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12243288655
                                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +++Er RR ri +++ +L++l+P+     +k  + +e+L  AveYIk+Lq
  Zpz_sc00636.1.g00160.1.sm.mkhc 243 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSEMLDTAVEYIKELQ 288
                                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.348237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-15240299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-12241292No hitNo description
Gene3DG3DSA:4.10.280.101.5E-16242298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10243288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAAPPGRSRV APPETQLSSG LTSCESSGRT DGGALERAYG GSGEIRVPPP PPVASAHQMG  60
QPQQTQHGLL RHSSSPAGLL SRLVADTHGM SATTGMGSYP HGGTDTMAHG HNRRLSSQWS  120
FSRQDLPQIS EMGMIPDIGE SIIAGGCNSS SDGGAQSSSY LSRNFSVGSW DDTNSIMFSS  180
PGKKVKVDAA DDMVTSFSNI DSQFGLSKSS LEMSGMDDYL QLQQDSIACR VRAKRGCATH  240
PRSIAERERR TRISKRLKKL QDLVPNMDKQ TNTSEMLDTA VEYIKELQSQ VEKLKHDQAN  300
CSCAGNQNC
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00636.1.g00160.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814593.11e-169transcription factor bHLH128-like
TrEMBLA0A2S3HP781e-168A0A2S3HP78_9POAL; Uncharacterized protein
STRINGPavir.J01306.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-51bHLH family protein