PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00646.1.g00280.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 217aa    MW: 24120.3 Da    PI: 8.8514
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00646.1.g00280.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.31e-0766131176
                          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkw 76 
                                   ++Yn ++ e GF +r s+s+++ r++ + ++++vC  +g +  + +          + r+gCk ++++++++d+ w
  Zpz_sc00646.1.g00280.1.sm.mk  66 NYYNLHSWEKGFGIRCSSSETN-RQQYVNMKELVCMYQGWPGANIRG---------SMRCGCKSRMVLRRTDDHGW 131
                                   69****************9998.6666*************9998766.........99************998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVNHTTKVRP DAERQRGTCG PSERKPIVGR LTALEQALLD YKKKPGSCVI TPKEGVAFDS  60
YNEAFNYYNL HSWEKGFGIR CSSSETNRQQ YVNMKELVCM YQGWPGANIR GSMRCGCKSR  120
MVLRRTDDHG WLKPLCGAIA REVATDDIET NLYERSVGSV SAASLEPTRA EVMTAQGDHH  180
SFGRRWPSTT VPPWQIGATP LPPLGGGGGD IRYPHFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00646.1.g00280.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.13e-09FAR1-related sequence 6