PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00663.1.g00230.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 135aa MW: 14438.3 Da PI: 11.8358

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00663.1.g00230.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.2e-17	17	66	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 gy+GVr+++ +g+Wv+eIr+p + r r +lg++ t+e Aa a++ a l+g Zpz_sc00663.1.g00230.1.sm.mk 17 GYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVFFLRG 66 8***777.******943...5*******************999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.0E-23	17	69	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.599	17	78	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-16	17	69	IPR016177	DNA-binding domain
SMART	SM00380	3.9E-22	17	80	IPR001471	AP2/ERF domain
Pfam	PF00847	1.9E-9	17	66	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.3E-9	18	29	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.3E-9	40	56	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MRRATGSGEA PAGERRGYRG VRRRRWGKWV SEIRVPGTRE RLWLGSYATP EAAAVAHDTA 60 VFFLRGGGAT GGGGDTFRSS RTQDAVAVFV NRQVRADRAC TEATVLAMSS SVPALGNTSH 120 FVIVASLPCI KLTST

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00663.1.g00230.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954530	3e-53	EU954530.1 Zea mays clone 1469452 transcriptional factor TINY mRNA, complete cds.
GenBank	KJ727676	3e-53	KJ727676.1 Zea mays clone pUT5603 AP2-EREBP transcription factor (EREB63) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9SNE1	8e-22	ERF11_ARATH; Ethylene-responsive transcription factor ERF011

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6433	29	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50260.1	6e-16	cooperatively regulated by ethylene and jasmonate 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Shen PC,Hour AL,Liu LD Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis. Bot Stud, 2017. 58(1): p. 22 [PMID:28510204]