PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00671.1.g00070.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 174aa    MW: 18452.1 Da    PI: 9.978
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00671.1.g00070.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY573.9e-182402159
                                  -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                                   rsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  Zpz_sc00671.1.g00070.1.sm.mk  2 CRSYYRCTTQRCPVKKRVERSYQDPAVVITTYEGKHTHP 40
                                  69************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.923142IPR003657WRKY domain
SuperFamilySSF1182901.03E-14242IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-16242IPR003657WRKY domain
PfamPF031061.1E-12240IPR003657WRKY domain
SMARTSM007741.6E-9341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MCRSYYRCTT QRCPVKKRVE RSYQDPAVVI TTYEGKHTHP IPATLRGSTH LLAAHGLHHH  60
LGALAPPPMP HAMGAAAPTF GRAGGGGIDV LGLLQPRGGT SSHHAMLPTT MSQTSLTRGP  120
VSSSVTMSAT TTTPSSSPPS LQMQHFMAQD FGLLQDMMMP SSFVHTNGGG NIQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00671.1.g00070.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032225e-71AP003222.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0003E08.
GenBankAP0149575e-71AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126095e-71CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969457.13e-54probable WRKY transcription factor 48
TrEMBLA0A0A9RQQ56e-59A0A0A9RQQ5_ARUDO; Uncharacterized protein
STRINGSi001816m1e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-24WRKY DNA-binding protein 71