PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00680.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 257aa    MW: 27879.3 Da    PI: 9.2568
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00680.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36e-21105154255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +grW+AeIrdp     +  +r++lg+f+taeeAa+a++aa ++l+g
  Zpz_sc00680.1.g00040.1.am.mk 105 RYTGVRRRP-WGRWAAEIRDP-----QlrRRVWLGTFDTAEEAAAAYDAACRRLRG 154
                                   69*******.**********9.....445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.41E-20105162IPR016177DNA-binding domain
PROSITE profilePS5103222.589105162IPR001471AP2/ERF domain
PfamPF008472.9E-14105154IPR001471AP2/ERF domain
CDDcd000186.26E-15105160No hitNo description
SMARTSM003806.8E-29105168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-27105161IPR001471AP2/ERF domain
PRINTSPR003671.8E-10106117IPR001471AP2/ERF domain
PRINTSPR003671.8E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDPSLETRKA AAGEAAVGIE EDKLAVEVEE PAAPRCRLVR IIVHDEDATD SSSDEDDDEG  60
QEERKRRVQP PAAAPAGVKR KRVMLRAAGG EGEERKKAAA EEEVRYTGVR RRPWGRWAAE  120
IRDPQLRRRV WLGTFDTAEE AAAAYDAACR RLRGSGAATN LSSGDTTPAH RPAAAPLPPR  180
PPLPPIRRPP QQEKKPPPPS QDSPPETEKQ TAASSSPEPF VPLPVWALLS GKRKKRSGCG  240
GRVPALRTPP AEEASRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1797161671Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16481KRRVQPPAAAPAGVKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00680.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2769534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.13e-16ERF domain protein 10