PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00700.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 800aa    MW: 85613.6 Da    PI: 8.5588
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00700.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016361382223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   +Cp Cgk+F +   +  H+r+H
  Zpz_sc00700.1.g00120.1.am.mk 361 TCPECGKTFLSDKAMYGHLRSH 382
                                   8*********999999999999 PP
2zf-C2H212.40.00048654676123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+Cp C ksF+++  L  H   H
  Zpz_sc00700.1.g00120.1.am.mk 654 YVCPTCLKSFPTHQALGGHKAAH 676
                                   9************9998887666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.9E-7360382No hitNo description
SMARTSM003550.011360382IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367360382IPR007087Zinc finger, C2H2
PfamPF139122.6E-4362384IPR007087Zinc finger, C2H2
PROSITE patternPS000280362382IPR007087Zinc finger, C2H2
SuperFamilySSF576674.9E-7649676No hitNo description
PfamPF139123.1E-9654677IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995654676IPR007087Zinc finger, C2H2
SMARTSM003550.18654676IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280656676IPR007087Zinc finger, C2H2
PfamPF139121.8E-8744767IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182744766IPR007087Zinc finger, C2H2
SMARTSM003550.52744766IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280746766IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MLGLIRDERD GDFLIPTLAE RHGRGTMTDR STERASPRAS SRPPASWRSG TGERTVIEGD  60
DDESSCPSDT CADCSKRAWP GDWWRPVGLY IIIRRAELAI MAFDFHLTVR TSKSKSKAAN  120
VRTGKTAQQP HTPHVHLHAS GLSPASLAVT QQAEASSEEP ALRSGVPAPI PPAPEVRVCG  180
ELRASWEGSC RFFDLLRPRG SVSSVPCILR PSLSTYTGRL PAWSRPRSGG VVQLGSPRPC  240
CAQCAYASAG SPADCDASGF DRLPIPVPPR ETQILCDPST TTSTMDLRAY CIKATEAASA  300
LSIHSEDDEE VVKLTSNAVL LKLEVEAGTS AGVTASCKGS GLSPLGLDNA KAAGSRGRDL  360
TCPECGKTFL SDKAMYGHLR SHPERGYKGA IRPDATASVT AVAGDKKPER KVPQKEAGES  420
PATNMSVTTP AVAGEKRQKE ESWLWTKGSV TAKRRRGSST PSAASAPVAA AQSSSSCSEE  480
EEAAMILLEI ASGVTTSETQ QSRQTVSTRD AKHQIPEVDE QPMLLDHVAR NQMIPEFAQL  540
MSPDHVACDV MAHQTLEDGQ QIVQPELAPV VILESQTPEI KELTVPKDAV VAMFQDKKTP  600
ANQQQRAAPG RGAKKSKKRR VLNAKKMPET APPEAANVKQ PVNRVPSRAS NKKYVCPTCL  660
KSFPTHQALG GHKAAHNKGG GGKHGVYHDD PAMVQAMRNI LARQKQSSNA VIGGTAVAEG  720
AVIGAGQDQE RHDSGPPVPP AAQHVCAECN MAFRSGQALG GHKRKHWYLV KQQAKAAPNA  780
ALRDFDLHEL PRDVEGENKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00700.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-08C2H2 family protein