PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00719.1.g00150.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 132aa    MW: 14285.4 Da    PI: 9.0289
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00719.1.g00150.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.43.1e-0554842354
                                  SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRak 54
                                  ryp+a+e   LA++ gLt++qV+ WF   R +
  Zpz_sc00719.1.g00150.1.am.mk 54 RYPDAQE-DMLAARSGLTQNQVSCWFIDARVR 84
                                  7888876.78****************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.82E-83794IPR009057Homeodomain-like
CDDcd000861.02E-65488No hitNo description
PfamPF059206.1E-75584IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.609.4E-105790IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MLASGAADAP HSISATDGRS SGRQEKIGSS EAEAHSIHSS ASLFVMINSM LFLRYPDAQE  60
DMLAARSGLT QNQVSCWFID ARVRIWKPVL PAACRFASAM QARRLCYAVL CPSPNGVRPS  120
TLSVVTTRVL FI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00719.1.g00150.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6531022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.15e-11homeobox gene 1