PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00728.1.g00130.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 876aa MW: 95473.5 Da PI: 5.5337

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00728.1.g00130.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.1	3.4e-24	84	174	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwev 78 +fYneYA+++GF r+ +s++sk ++e+ ++++fvCs+eg ++++ + + +++r+r++ r gC+a+++v +e +++w+v Zpz_sc00728.1.g00130.1.am.mk 84 QFYNEYARRLGFPFRVGRSRRSKGTEEVlVMKRFVCSREGMYKKKQPSsdDATRKRERVSMRDGCNAMMEVVRE-SDHWVV 163 6*******************8777652789****98887766557888999***********99.9* PP FAR1 79 tkleleHnHel 89 +kle+ HnH l Zpz_sc00728.1.g00130.1.am.mk 164 SKLEKAHNHGL 174 *******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-21	84	174	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence Send to blast
MEGARSEGDE LIADYVDCLM SLDTSARSHQ NDSIVLGDSI VEGAPSLSVG GAAEPEVMKD 60 FALGDDPNEP VLGMVFESDE AAKQFYNEYA RRLGFPFRVG RSRRSKGTEE VLVMKRFVCS 120 REGMYKKKQP SSDDATRKRE RVSMRDGCNA MMEVVRESDH WVVSKLEKAH NHGLGTCTKV 180 GYLRARVRST SPSARSTSRL NPEAASFTIG RRSTELPSGK STPSWLNFSI SPSSSSDGRS 240 SPTSIGPQSP HPPLRSYCQV AQVAREGRPA CAQGPRVRRP DLPPPKSDLP PPKQGPSVAG 300 DWEVMHHRRW CRVHCAPPPP HQAQVARPVP PDLRPSSRQF TGGEVGQVTG GGGGVQPASR 360 RLGRLRLPRL RVPHRVSWWL PPLGRRLNQR PLRPLAPPLS SSLRFQGPTS ITPTMDAAED 420 ELARALVAMV VGTRPAVSVP RVKRHLREHF GVAEEEVQVR RFWPEDFLIV FADIEAASAV 480 LHAPPPMDVF LEIENLPAHA WDLETAQTIV GSSCTILAVF PESLSKASMS SFKLIAWCVD 540 PNLIPEVVDV LILEKPEMPV PNNLFLHPEE LIFHLWDALH YSTVIRLIEV QDFHTLSSSD 600 DDSDDWSGDG EDSDSEGGDG LPVLVVATSS AGHRGFAVRT GACCLGGAAP TASGFLRPSF 660 AAGRKFVPTP DFWDPMFLEA ALPPEWATVP ISPSVERGDE TTGAPTSLVE EHEFLGCLSD 720 SLPPNEAGLS SLAPPEVQLS LPDEPRSVAD FAADPACQFT LEEAAACTTG PYLSSSTEQP 780 HCKQNSCSHT GACSSTERTY EKARIISENA APDADAVVQY EQLFVNGLSE QQMQALTELF 840 PDHVSAQAQA EYLEVVRDAW HCPLVGANPF QRPPKT

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence Send to blast

MEGARSEGDE LIADYVDCLM SLDTSARSHQ NDSIVLGDSI VEGAPSLSVG GAAEPEVMKD  60
FALGDDPNEP VLGMVFESDE AAKQFYNEYA RRLGFPFRVG RSRRSKGTEE VLVMKRFVCS  120
REGMYKKKQP SSDDATRKRE RVSMRDGCNA MMEVVRESDH WVVSKLEKAH NHGLGTCTKV  180
GYLRARVRST SPSARSTSRL NPEAASFTIG RRSTELPSGK STPSWLNFSI SPSSSSDGRS  240
SPTSIGPQSP HPPLRSYCQV AQVAREGRPA CAQGPRVRRP DLPPPKSDLP PPKQGPSVAG  300
DWEVMHHRRW CRVHCAPPPP HQAQVARPVP PDLRPSSRQF TGGEVGQVTG GGGGVQPASR  360
RLGRLRLPRL RVPHRVSWWL PPLGRRLNQR PLRPLAPPLS SSLRFQGPTS ITPTMDAAED  420
ELARALVAMV VGTRPAVSVP RVKRHLREHF GVAEEEVQVR RFWPEDFLIV FADIEAASAV  480
LHAPPPMDVF LEIENLPAHA WDLETAQTIV GSSCTILAVF PESLSKASMS SFKLIAWCVD  540
PNLIPEVVDV LILEKPEMPV PNNLFLHPEE LIFHLWDALH YSTVIRLIEV QDFHTLSSSD  600
DDSDDWSGDG EDSDSEGGDG LPVLVVATSS AGHRGFAVRT GACCLGGAAP TASGFLRPSF  660
AAGRKFVPTP DFWDPMFLEA ALPPEWATVP ISPSVERGDE TTGAPTSLVE EHEFLGCLSD  720
SLPPNEAGLS SLAPPEVQLS LPDEPRSVAD FAADPACQFT LEEAAACTTG PYLSSSTEQP  780
HCKQNSCSHT GACSSTERTY EKARIISENA APDADAVVQY EQLFVNGLSE QQMQALTELF  840
PDHVSAQAQA EYLEVVRDAW HCPLVGANPF QRPPKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00728.1.g00130.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-19	FAR1 family protein