PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00745.1.g00280.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 294aa    MW: 31291.9 Da    PI: 8.2766
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00745.1.g00280.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-31186236151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Zpz_sc00745.1.g00280.1.am.mk 186 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 236
                                   79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.277178238IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-41178237IPR002100Transcription factor, MADS-box
CDDcd002659.15E-41179237No hitNo description
SuperFamilySSF554551.7E-29179242IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-32180200IPR002100Transcription factor, MADS-box
PROSITE patternPS003500180234IPR002100Transcription factor, MADS-box
PfamPF003195.0E-26187234IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-32200215IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-32215236IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MWISLSLSLS LSLSLCGSPE RASGATGGVK QSTGAEKAIG GAHARRERRP ITIPPSLPET  60
GYGGPRLGFP PSSCFAGNGN LISGPLAPTG CFAERARSLT SAQLLPPVHE MSPATTVLLV  120
EACLQLPSLS SSLLDLLLSC LLGESDLAAE AEGSWGGKGK QQQQQEEAPP PPPPATAMGR  180
GRVELKRIEN KINRQVTFAK RRNGLLKKAY ELSVLCDAEV ALIIFSTRGK LYEFCSTQRS  240
ARPAIGEDEK QVAFLEYWLM DPELGFGGVP GRDPGETFGF RVSFPGPFGR SILL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19178237160MEF2C
5f28_B3e-19178237160MEF2C
5f28_C3e-19178237160MEF2C
5f28_D3e-19178237160MEF2C
6byy_A2e-19178237160MEF2 CHIMERA
6byy_B2e-19178237160MEF2 CHIMERA
6byy_C2e-19178237160MEF2 CHIMERA
6byy_D2e-19178237160MEF2 CHIMERA
6bz1_A2e-19178237160MEF2 CHIMERA
6bz1_B2e-19178237160MEF2 CHIMERA
6bz1_C2e-19178237160MEF2 CHIMERA
6bz1_D2e-19178237160MEF2 CHIMERA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00745.1.g00280.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4306922e-84AJ430692.1 Zea mays mRNA for putative MADS-domain transcription factor (m6 gene).
GenBankBT0333602e-84BT033360.1 Zea mays full-length cDNA clone ZM_BFb0092L03 mRNA, complete cds.
GenBankBT0426052e-84BT042605.1 Zea mays full-length cDNA clone ZM_BFb0367C04 mRNA, complete cds.
GenBankEU9598672e-84EU959867.1 Zea mays clone 220179 SRF-type transcription factor family protein mRNA, complete cds.
GenBankEU9607112e-84EU960711.1 Zea mays clone 227805 SRF-type transcription factor family protein mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2814435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.34e-35MIKC_MADS family protein