PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00756.1.g00060.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 451aa    MW: 48955.8 Da    PI: 8.2655
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00756.1.g00060.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.25e-071371951056
                                     HHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
                        Homeobox  10 eqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 
                                     +++ e+e+  ++  ++ p ++  + LA+k            ++ +qV +WFqNrR+ ++
  Zpz_sc00756.1.g00060.1.am.mkhc 137 SEVAEMEARLKQlhHSVPGRDVLQSLADKFsasperagrvAVQPKQVWNWFQNRRYSYR 195
                                     56666666666555667888888888888888888888889***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0021127201IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.5E-6133197IPR009057Homeodomain-like
SuperFamilySSF466891.33E-8133197IPR009057Homeodomain-like
PROSITE profilePS500719.426133197IPR001356Homeobox domain
CDDcd000862.31E-4133195No hitNo description
PfamPF000462.1E-4137195IPR001356Homeobox domain
PfamPF167194.3E-21259337IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MHGRVSTLNN TGIRIFWAFR LHALLLDIAA PQLSASVADL YVAAVHHGAA PVQAEEEHPV  60
VRGSNPDPQS GDRFDKPATA ALRQRQHLHS LRSLTPFPSR RSDRAGGAAG SHRRRREEPP  120
MGRPPSSGAP AFRFLPSEVA EMEARLKQLH HSVPGRDVLQ SLADKFSASP ERAGRVAVQP  180
KQVWNWFQNR RYSYRAKGVR PAQQPPPPPS KMTPSGADRV QHATAASAFR AAQTPAAAAG  240
ANPGSTPSTG KGAVEGAPIE FEAKSARDGA WYDVAGFLSH RMFETGDPEV RVRFSGFGAE  300
EDEWVNVRKC VRQRSLPCEA TECVAVLPGD LILCFQEIVP LRKVCRRPET DYRLQILHAS  360
RAAAAASDVH APPREVRMES ASEEKSPAGQ EPVKQHKMMD VNTDEVTMVS DQGEAAGKTA  420
PPTPSAQAET HNNSSSDVDA EPAPVVEVDE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-28257337282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-28257337282SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-28257337282SHH1 SAWADEE
4iur_B2e-28257337282SHH1 SAWADEE
4iut_A2e-28257337282SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-28257337282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-28257337282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-28257337282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-28257337282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-28257337282SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00756.1.g00060.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1018497e-76FP101849.1 Phyllostachys edulis cDNA clone: bphylf045l16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.11e-160protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.11e-160protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.11e-160protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.11e-160protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-87SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1D6EP151e-163A0A1D6EP15_MAIZE; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
STRINGSi030167m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-75sequence-specific DNA binding transcription factors;sequence-specific DNA binding