PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00760.1.g00090.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 166aa MW: 18880.3 Da PI: 5.0652

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00760.1.g00090.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.6	3.1e-50	20	150	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhP+dee++++yL +kv +++++ +i e++i+++ePw+Lp+++k +ekew+f+s +d+ky++g+r nrat++g Zpz_sc00760.1.g00090.1.sm.mk 20 LPPGFRFHPHDEEIITFYLIPKVLNSNFTS-VAIGEANINNSEPWELPTTAKMGEKEWFFYSLKDHKYQNGERINRATNAG 99 79***********************988.67***********989999*********************** PP NAM 82 yWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129 +Wkatgkdke++++ + +g+kktLvfy+grapkgekt W+mhey+le Zpz_sc00760.1.g00090.1.sm.mk 100 FWKATGKDKEIYQAsvmFPTIIGMKKTLVFYTGRAPKGEKTGWIMHEYQLE 150 *********64443445*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-52	17	150	IPR003441	NAC domain
PROSITE profile	PS51005	49.16	20	166	IPR003441	NAC domain
Pfam	PF02365	1.5E-25	21	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MDQQEQEGIR GGVDDGCLNL PPGFRFHPHD EEIITFYLIP KVLNSNFTSV AIGEANINNS 60 EPWELPTTAK MGEKEWFFYS LKDHKYQNGE RINRATNAGF WKATGKDKEI YQASVMFPTI 120 IGMKKTLVFY TGRAPKGEKT GWIMHEYQLE GIPEDLKEQE GACATN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-42	18	149	18	145	NAC domain-containing protein 19
3swm_B	1e-42	18	149	18	145	NAC domain-containing protein 19
3swm_C	1e-42	18	149	18	145	NAC domain-containing protein 19
3swm_D	1e-42	18	149	18	145	NAC domain-containing protein 19
3swp_A	1e-42	18	149	18	145	NAC domain-containing protein 19
3swp_B	1e-42	18	149	18	145	NAC domain-containing protein 19
3swp_C	1e-42	18	149	18	145	NAC domain-containing protein 19
3swp_D	1e-42	18	149	18	145	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00760.1.g00090.1.sm.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024983086.1	4e-66	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	2e-61	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A118JZL6	9e-65	A0A118JZL6_CYNCS; No apical meristem (NAM) protein
TrEMBL	A0A1E5V4C4	3e-65	A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRING	Pavir.Ba02955.1.p	3e-64	(Panicum virgatum)
STRING	Pavir.Eb00839.1.p	3e-64	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	7e-64	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]