PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00764.1.g00270.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 246aa MW: 27077.6 Da PI: 9.7611

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00764.1.g00270.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.7	3e-29	77	130	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 k rlrWt eLHerFveav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQ R Zpz_sc00764.1.g00270.1.sm.mk 77 KSRLRWTLELHERFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQVQR 130 68*************************************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.165	74	134	IPR017930	Myb domain
SuperFamily	SSF46689	7.7E-15	75	132	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-27	75	131	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-23	77	131	IPR006447	Myb domain, plants
Pfam	PF00249	4.0E-7	79	128	IPR001005	SANT/Myb domain
Pfam	PF14379	4.5E-9	125	153	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEFQFLSEQL GIAITDNEES PRLDKHFFTD IYDTPPPQLS ALPVSSCSNQ SIQNPGSPVK 60 VQLNSSRSSS GSVATNKSRL RWTLELHERF VEAVNKLDGP EKATPKGVLK LMKVEGLTIY 120 HVKSHLQVQR QLQLRIEEHA KYLQKLLEEQ QKTGNTLPPK TLSKTQAESP ESVSKESGEP 180 EAGNSSPPSS KKRVPDVDME SNLLAGSKRT KVQVFKFEVI LQLGYGSSSP SGSVRTGAKA 240 RKGGDH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-23	77	130	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	77	130	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	77	130	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	77	130	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250\|UniProtKB:Q6YXZ4}.
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00764.1.g00270.1.sm.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812859.1	1e-87	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812860.1	1e-87	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812862.1	1e-87	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812863.1	1e-87	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	A2X0Q0	5e-72	PHR3_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	4e-72	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A2S3HGL4	2e-86	A0A2S3HGL4_9POAL; Uncharacterized protein
STRING	Pavir.J27649.1.p	8e-84	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	3e-45	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]