PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00767.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21126.4 Da    PI: 11.2622
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00767.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.96.4e-194184245
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                  +i++k + qvtfskR+ g++KKA+E+   Cda+vav+ifs  gk
  Zpz_sc00767.1.g00040.1.am.mk 41 PIQDKGRSQVTFSKRKSGLFKKASEIVLRCDAKVAVVIFSRAGK 84
                                  699**************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.6143292IPR002100Transcription factor, MADS-box
SMARTSM004327.5E-203291IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-1933100IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-133454IPR002100Transcription factor, MADS-box
PfamPF003192.7E-194286IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-135469IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-136990IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
LRPRNRCRSP RRRAVASEVD PPEPSTMRKA SKGRQVITIA PIQDKGRSQV TFSKRKSGLF  60
KKASEIVLRC DAKVAVVIFS RAGKPYALGT PSVDAVLAPL PEHGGFPAPS LPPVPDRAAV  120
EATVRQLEDT KALVAAEQLR MQAVGERVMQ AAAGRGSWWQ ADVEKLGAAE LPEFARALQQ  180
LRHNVQRHID TKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00767.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811768.14e-54agamous-like MADS-box protein AGL62
TrEMBLA0A1E5UM656e-51A0A1E5UM65_9POAL; Uncharacterized protein
TrEMBLA0A2S3HIR91e-52A0A2S3HIR9_9POAL; Uncharacterized protein
TrEMBLA0A2T7DXP11e-52A0A2T7DXP1_9POAL; Uncharacterized protein
STRINGPavir.J16245.1.p2e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-25AGAMOUS-like 62