PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00772.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 354aa    MW: 38985.1 Da    PI: 8.684
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00772.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.41.5e-15279304126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +ktelC+ + +tG C+yGd+C+FaHg
  Zpz_sc00772.1.g00020.1.am.mk 279 FKTELCNKWEETGACPYGDQCQFAHG 304
                                   79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.3E-19273311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10275310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601278306IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10278305IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-12279304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-10312342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-7313342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338316344IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4316343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MQEALISPAN ADRLRSALEL KSFAFGDQRL SSPRHFGEDA LFRCSSPFSP SFGFSSPSPH  60
ATSVSLSPSS SASLVDDGDD AAAGDVTGHR LQLARLALQY QEAADRYELC LARLALQYQE  120
AADRYELCVA RLAEAADEAA ALRRENAQLR VANCDLARRL ALLSGKQTAP AAIAEEIRRL  180
RHGEQNQNAI PAAAERASEK LTVLPKSISV RSKDYLKMNK APVTPVANNR RPRASNPTVT  240
NHSSQRLYVD ADSGMKGEKS KVQRSAGGME LEVYNQGMFK TELCNKWEET GACPYGDQCQ  300
FAHGVAELRP VIRHPRYKTQ VCRMVLAGEP CPYGHRCHFR HTLTPAERLL LPRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21279341466Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00772.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0348004e-98BT034800.1 Zea mays full-length cDNA clone ZM_BFb0019C18 mRNA, complete cds.
GenBankBT0421474e-98BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154780.11e-142zinc finger CCCH domain-containing protein 9-like isoform X1
SwissprotA2ZVY51e-113C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A287L6P61e-141A0A287L6P6_HORVV; Uncharacterized protein
STRINGMLOC_5666.31e-142(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-57C3H family protein