PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00785.1.g00020.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 693aa    MW: 78079.3 Da    PI: 9.4876
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00785.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249e-084683342
                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42
                                    +W+++E   +++a +++G++ Wk+I+  +g  ++  +++s
  Zpz_sc00785.1.g00020.1.sm.mkhc 46 KWSKDELTHFYEAYRRHGKD-WKKISLAVG-SKSSDMVQS 83
                                    8*****************99.********9.888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.3074299IPR017884SANT domain
PfamPF002491.2E-64683IPR001005SANT/Myb domain
CDDcd001678.27E-44683No hitNo description
SuperFamilySSF466892.24E-84690IPR009057Homeodomain-like
PfamPF065841.1E-28476576IPR033471DIRP domain
SMARTSM011353.4E-37476577IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MGPAKGTRTI SKTVIKGCVD QQHPEDPESS SKSKQKKRKN AELDPKWSKD ELTHFYEAYR  60
RHGKDWKKIS LAVGSKSSDM VQSLYSIHRT FLSLPERQAT ATGFIALVTG HHNILDESTS  120
RGGGQTGRAS GKARQRRDAT EQKANGGLVV RKGQTHSVRR RTSRIPVTFT ADRIATDDDM  180
AKGVKNSTKN NAEGINNVCD NSPNRSSGIT EANKAYQGQI FLDSKEVGDA EMSQSQHLKK  240
RKIKQTMDVK VQTGKVEHET MMEAKEEIKL SDSLDQQQIL SDFISEDDML VLDVLQSLVN  300
APSETSKLKI NNASGSLGET YSTIFHRMEE DHSPCTLSKK AKPVGMCSAP KTRQEKNKKI  360
LDAEVHVNEQ NISVSNLVQP EGHTVRITEV SSYSVSKRPM LETSVNSCAE VKPSAPAETK  420
SEIKMSRRTI RKSKMNCKTK YVPHKCTEGS DNLQARKLQN GLSSELFRRW CTYEWFYSAV  480
DYPWFSNNEF VSYLNHANLC HIPRLTRSEW STVRSSLGKP RRFSDQLLAM EKEKLEDYRE  540
NVRKIYAQLS NGSQNSLPVD LARPFSIGQQ VIVRHPSSKE ICDGKVVMMG RDFYKVHFSN  600
PDLGVDIVKD TDCMPVNWLE NLPDDMKRSC LSNNVQSVLY MERIPNLTTS ENLYHTTNGL  660
SVHEKAKTLH LIPDEKVVVL FYPNSVPKDS SIL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00785.1.g00020.1.sm.mkhc
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968511.10.0protein ALWAYS EARLY 2
TrEMBLK3XEE30.0K3XEE3_SETIT; Uncharacterized protein
STRINGSi000260m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-64DNA binding