PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00785.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 592aa    MW: 63076.2 Da    PI: 9.1873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00785.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-06205227123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C+ Cgk F r  nL+ H r H
  Zpz_sc00785.1.g00110.1.am.mk 205 YVCEVCGKGFQRDQNLQLHRRGH 227
                                   9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.97E-8204227No hitNo description
SMARTSM003550.0081205227IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.822205227IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-6205227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
SMARTSM0035534247277IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001270302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.97E-8277302No hitNo description
SMARTSM00355250282302IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MEEIPNPRAE GKRLLTERRV QQQHQREGGS GTRGKDRKPR APCGLAAVVF RRPGAALDQL  60
NLTERPRHAR REEVSTPVPT AVAAAGSSRT STSRSGPAPA CARADPFVNY SSKRGWVLLA  120
SEEGEEEDRE EEMMLKDLAA IQQQQQLAAD ENMSNLTSAS GDQASVSSHP LPPPAKKKRS  180
LPGNPDPDAE VIALSPRTLM ATNRYVCEVC GKGFQRDQNL QLHRRGHNLP WKLKQRNPKE  240
AARKKVYVCP EPGCVHNDPA RALGDLTGIK KHFSRKHGEK KWKCDRCSKR YAVHSDWKAH  300
SKVCGTRERD SFITHRAFCD ALAEESARAV TAAAAVAGQQ HPGMLFPHAG AGGGPGLQLP  360
SVLDPSQPLG GHGLSLQEMC LKREQQPFSW LAAQQQQQQQ QMDMPGAGLS STVFGSARPL  420
DQDYVGSSTP DSNSQPAGLT FGFSPSSATG TASAAHMSAT ALLQKAAQMG ATLSRPSNQG  480
QMASTHSRSA TTNAATATAP ASAAATSNVT STGLNFGASH FGTDERSDRE AAGNAAGAGG  540
ANDGHTRDFL GLRAFSHGDI LSIAGFDPCM SSASSSAAAY EQGHPNSKQW HV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-21278328364Zinc finger protein JACKDAW
5b3h_F2e-21278328364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231244KLKQRNPKEAARKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00785.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056631e-180AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655722.10.0protein indeterminate-domain 7
RefseqXP_008655723.10.0protein indeterminate-domain 7
TrEMBLA0A3L6R1260.0A0A3L6R126_PANMI; Uncharacterized protein
STRINGPavir.Eb00288.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-90indeterminate(ID)-domain 7