PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00801.1.g00070.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 1195aa MW: 128322 Da PI: 10.9761

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00801.1.g00070.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.5	1.2e-13	841	887	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+a +K +Ka+ L ++ +++k+L Zpz_sc00801.1.g00070.1.am.mk 841 RSHSEAERRRRQRINGHLAKLRSLLPNA-----TKTDKASLLAEVLDHVKEL 887 78************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10716	6.4E-25	143	215	IPR019654	NAD(P)H-quinone oxidoreductase subunit L
PROSITE profile	PS50888	16.672	838	887	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-11	841	887	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.44E-13	841	890	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-13	842	896	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.11E-14	842	896	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-12	844	893	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.7E-4	933	980	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0016655	Molecular Function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1195 aa Download sequence Send to blast
MVGGASIDNC CNGSVTGGFD PCKKNLTIRC APRPRLTRKA HRKTRLERPA MDATASWRVL 60 SPASSAPPRA LQLLPKRQAI LAGAPRYSAS SKSRVLCLLH DKPALTAEKE SSQLQLQRLA 120 AALQWGAVWA AVEAPAALAV TGEEDLDILG ILPTVAAFAF FYFLVAPPLL MNWMRTRWYK 180 RKFVETYLQF MFTYIFYPAL MFWAPFVNFR KFPRDPTMKY PWSKPKEGTP LFKDRYPPIE 240 SYNTHRLALS LRHMSPAGAH SSRENLEHLH ACSLFSGREK GEHAFLGIPA PAGSSKRKGA 300 WHSRHNGVAG VSSTRGARCG GVPSASCAIA AGLGCAAAAV MASSSPIHTP RWEGKNCAST 360 QNLPSTTLEL ISMLDPAMLA GLPPSSPLTV RAIVVSDHLI YLGTDGVTSP DFLRILRIAP 420 PSHSLSSIAS LSSPKASSSS LTRSFPALFV ASAPYTASPL SLLTSMETPP PRLAPSPLPA 480 AKICSALDSR CAAAPAARRR HRGMAASRPY WTLYAAAKRG GACYTAPELG QKEERKEAAS 540 AKRASKLCCE PHDTGSGRAR RPSGGPRPTA RTGRGMLRSP CMTQSSGRAS GPGARGGNNC 600 VRSGAAEEAH APDKRPRSLY GTTGEEGRRQ RRAVLCGSGG TPEPGCLFPL TARQGRVARL 660 CRAGSGTTAA PMDHGFMVPE WVAATSIVVL KRRRPFDRER EQPEATTGST PPPTTSLSSR 720 AQGRQPGMWD GGVEHGSQEA AHHPLLGKPW LGAAPFSEPD VRVFEAAGAG YACDVFGGLG 780 HGGDGVLGFG FDAMPQQRRP RQHDPQRGKA GVSGLLGSLQ AELGRMAARD MMDAKALAAS 840 RSHSEAERRR RQRINGHLAK LRSLLPNATK TDKASLLAEV LDHVKELKRQ TSAMMVASDE 900 EASGTAQPLP TEADELAVDA AVGSDGRLLA RASLCCKDRP DLIPDIVRAL AALGMRARRA 960 EITTLGVRVR SVLLITADEG TGGDGDGQDD DRPIALHDDD ERTASHRRHE CITSVQEALR 1020 GVMDRRAASS DTSSPGGGGS IKRQRMNYAA QRQCSLESLS IGAGFGGPRL PRMFRDHEGL 1080 GRRRHRSSVG SIRRWASWTR PSAPSAPHGW LRPRPRSRSR RPISIPTRPS IARGAGRSHT 1140 RTNSGRWAGR AVSAPPKAPI RTICPESPRR ARGRRQDQGH IGTYACGGSN TELTI

Sequence ? help Back to Top

Protein Sequence Length: 1195 aa Download sequence Send to blast

MVGGASIDNC CNGSVTGGFD PCKKNLTIRC APRPRLTRKA HRKTRLERPA MDATASWRVL  60
SPASSAPPRA LQLLPKRQAI LAGAPRYSAS SKSRVLCLLH DKPALTAEKE SSQLQLQRLA  120
AALQWGAVWA AVEAPAALAV TGEEDLDILG ILPTVAAFAF FYFLVAPPLL MNWMRTRWYK  180
RKFVETYLQF MFTYIFYPAL MFWAPFVNFR KFPRDPTMKY PWSKPKEGTP LFKDRYPPIE  240
SYNTHRLALS LRHMSPAGAH SSRENLEHLH ACSLFSGREK GEHAFLGIPA PAGSSKRKGA  300
WHSRHNGVAG VSSTRGARCG GVPSASCAIA AGLGCAAAAV MASSSPIHTP RWEGKNCAST  360
QNLPSTTLEL ISMLDPAMLA GLPPSSPLTV RAIVVSDHLI YLGTDGVTSP DFLRILRIAP  420
PSHSLSSIAS LSSPKASSSS LTRSFPALFV ASAPYTASPL SLLTSMETPP PRLAPSPLPA  480
AKICSALDSR CAAAPAARRR HRGMAASRPY WTLYAAAKRG GACYTAPELG QKEERKEAAS  540
AKRASKLCCE PHDTGSGRAR RPSGGPRPTA RTGRGMLRSP CMTQSSGRAS GPGARGGNNC  600
VRSGAAEEAH APDKRPRSLY GTTGEEGRRQ RRAVLCGSGG TPEPGCLFPL TARQGRVARL  660
CRAGSGTTAA PMDHGFMVPE WVAATSIVVL KRRRPFDRER EQPEATTGST PPPTTSLSSR  720
AQGRQPGMWD GGVEHGSQEA AHHPLLGKPW LGAAPFSEPD VRVFEAAGAG YACDVFGGLG  780
HGGDGVLGFG FDAMPQQRRP RQHDPQRGKA GVSGLLGSLQ AELGRMAARD MMDAKALAAS  840
RSHSEAERRR RQRINGHLAK LRSLLPNATK TDKASLLAEV LDHVKELKRQ TSAMMVASDE  900
EASGTAQPLP TEADELAVDA AVGSDGRLLA RASLCCKDRP DLIPDIVRAL AALGMRARRA  960
EITTLGVRVR SVLLITADEG TGGDGDGQDD DRPIALHDDD ERTASHRRHE CITSVQEALR  1020
GVMDRRAASS DTSSPGGGGS IKRQRMNYAA QRQCSLESLS IGAGFGGPRL PRMFRDHEGL  1080
GRRRHRSSVG SIRRWASWTR PSAPSAPHGW LRPRPRSRSR RPISIPTRPS IARGAGRSHT  1140
RTNSGRWAGR AVSAPPKAPI RTICPESPRR ARGRRQDQGH IGTYACGGSN TELTI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00801.1.g00070.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063909	1e-125	BT063909.1 Zea mays full-length cDNA clone ZM_BFc0119D05 mRNA, complete cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-32	bHLH family protein