PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00804.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SRS
Protein Properties Length: 551aa    MW: 58816.9 Da    PI: 10.3191
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00804.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022106e-653514893153
                        DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkq 83 
                                   +g++sCqdCGnqakkdCah+RCRtCCksrgfdC  hvkstWvpaakrrerqqqla+         a++ skr+r++   ++
  Zpz_sc00804.1.g00070.1.am.mk 351 AGSISCQDCGNQAKKDCAHMRCRTCCKSRGFDCPSHVKSTWVPAAKRRERQQQLATG--------AAEPSKRPRDQ---RS 420
                                   6889*************************************************9987........56788999985...44 PP

                        DUF702  84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                   sa+ +t+ ss+  ++++  +++P+evsseavfrcvr++ vd++e+e+aY+t+vsi+GhvfkGiL+d G++
  Zpz_sc00804.1.g00070.1.am.mk 421 SATPTTTASSG-DQQQMVGERFPREVSSEAVFRCVRLGPVDEDEAEVAYRTTVSIAGHVFKGILHDVGPD 489
                                   45555555555.566788889***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.5E-60353489IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-26355397IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.8E-22440488IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MFLALQSGAD DFYLPIRSNQ ASKSRGLSRT TSRRSPTRSP HASKLAERRE RTETTDSSAG  60
GVRVYHAHPT DRKNGESAAL SHHFQPLPVY QLVLKRSLVP LQLYVLDGGR RRRQRQNLQQ  120
DLVDWIFMHP RMLSTIEDMR IVGGVAGPLF PVVSFPFITH PTPPHKRTDS TRSLARGTLA  180
SFDFDPKAAA SCCSRRRDLL IKLGKQNSSA LPRHAVYLVT AMRITPARGR RPIDTGDPAS  240
DPPLPGGAYG SGRMAGFPLG GGGGHGRGYN HPPINPSSGA ESSAAAAAAA AYLYTTATAP  300
PRGGGFQLWP QHHHPFQEHS FYASNIIRFA DDPAAGSSSS SRGGRGSGLG AGSISCQDCG  360
NQAKKDCAHM RCRTCCKSRG FDCPSHVKST WVPAAKRRER QQQLATGAAE PSKRPRDQRS  420
SATPTTTASS GDQQQMVGER FPREVSSEAV FRCVRLGPVD EDEAEVAYRT TVSIAGHVFK  480
GILHDVGPDP SVAGGGMMIR HAAEGSSPST AAAGEGSVSA TAPGSSSAVV MDPYPTPGPY  540
GGASFFHGHP R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108115GRRRRQRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00804.1.g00070.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821984.11e-126protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A3L6PPK21e-130A0A3L6PPK2_PANMI; Protein SHI RELATED SEQUENCE 1-like
STRINGSi015301m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-52Lateral root primordium (LRP) protein-related