PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00831.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 372aa    MW: 40459.7 Da    PI: 10.5488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00831.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12187233354
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   r+h+e+Er+RR+riN  +++Lr+llP a      +++Ka+ L ++v+++++L
  Zpz_sc00831.1.g00070.1.am.mk 187 RNHSEAERKRRQRINAHLATLRTLLPAA-----SRMDKAALLGEVVRHVREL 233
                                   68*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.44184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-10187234No hitNo description
Gene3DG3DSA:4.10.280.108.2E-14187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10187233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-13187239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-12190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.8E-5279345No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MRRTPHSTPL TADSIAVRRE DARCWLHFVP GQNDATGSKT QAVVSPLTRS SLSLSLSHPQ  60
SLEMGERCPD PGKAKMTGPV SPDDHRTVID QMVFHDQQEG VTVAGRRRVG HRLSRKRRRQ  120
TDGDHKQLFF SRPDRAADRY ANTAAAPPGR VALSSTRRMV PFQSEEAEAA LDGECSAPAK  180
TRSGPSRNHS EAERKRRQRI NAHLATLRTL LPAASRMDKA ALLGEVVRHV RELRGEADAA  240
AAGAAVAVPG EGDEVGVEEG HYCWYGGEMV ATRRVRAWVC CADRPGLMSE LGRAVRSVNA  300
RPVRAEIATV GGRTRSVLEL NVGGQQAAAD GESTSSRQAL QAALRAVLLS REELLAAECY  360
KRQRVSAHLA KV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114118RKRRR
2192197ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00831.1.g00070.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279681e-155KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957057.12e-99transcription factor bHLH30
RefseqXP_012699568.12e-99transcription factor bHLH30
TrEMBLA0A1E5W6B91e-104A0A1E5W6B9_9POAL; Uncharacterized protein
STRINGSi033077m9e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.13e-21basic helix-loop-helix 32