PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00835.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 442aa    MW: 48250.6 Da    PI: 11.0893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00835.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.4e-063684091454
                                   HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   d+i + +++L+ llP+ + ++++ + s a +L+ ++ YI+sL
  Zpz_sc00835.1.g00110.1.am.mk 368 DQISELLSKLQALLPEsQARNGAHRGSAARVLQDTCSYIRSL 409
                                   6899************666888888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.369354409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-6368426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-7368413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEIDVDRQFG HCMPQQRRDD RGINATGHGR VVPPTDKRCL GTVGCRAADR VRRATRDEGG  60
RRSKHYQPVR ARALRICRCF RFVSRMSYSA HAAAASVSRR APTCGASWLS RHRPNPANHA  120
HSNSRGQNAS KPIDVTSNRA CMENTQDKAT EILQSGTRTD LRVPRAYPVE GARLINAMRS  180
ARSPGRRTAH MVGAGGTPWP AFASPGARPA VHHTHTHPPP TENPGHATAP RELDLVGCGR  240
DRRADDALWP LLLLEMGSDR QMPSIRSNHQ SGGLARCVVQ SIQGWFVVGL CLDRAGDRPS  300
CAMLGCSGLW PRSLCLVPSR GRVNYSCMQA ARGLERIIAS CMSSSRRSRP RRAGSSLSSS  360
SSRTISEDQI SELLSKLQAL LPESQARNGA HRGSAARVLQ DTCSYIRSLH QEVDNLSETL  420
AELLSSADVT SDQAAVIRSL LM
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00835.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0965987e-91FP096598.1 Phyllostachys edulis cDNA clone: bphyst010g20, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4253822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-16bHLH family protein