PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00840.1.g00090.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 314aa MW: 34929.2 Da PI: 5.5705

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00840.1.g00090.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	1e-09	137	192	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as....kapskKlsKaeiLekAveYIksL 54 h ++Er+RR+++ + f++L +++P ++ + +K++ L ++eY+++L Zpz_sc00840.1.g00090.1.am.mk 137 EHVIAERKRREKMHHQFATLASIVPDiTKwmmlSEFNLQTDKVSLLDSTIEYVHKL 192 6999********************666**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-13	129	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.83	133	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-12	137	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-7	137	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.72E-9	138	197	No hit	No description
SMART	SM00353	3.9E-10	139	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MESANHQWLQ ELESDDEGEL ELINPLSMQK LAESLANELW GQPQEQQDNQ QEQCGYRSPS 60 LTGSHFVGHA NSTNRTKISS GVSNNMFPFT EASSSPVNLA AKEYTQQGVY STTTVKCCSS 120 SMTAKGGARR STSSVQEHVI AERKRREKMH HQFATLASIV PDITKWMMLS EFNLQTDKVS 180 LLDSTIEYVH KLRDRLKALQ DELQTTGSNT EESPAFDADC CVAGSKPNDG GDEAVSPKIE 240 VDVRGTTLLL RLVCREKKGV LLTVLMELEK HRISIVNTNV VPFAESSLNI TITAQVLHYL 300 LSNIPNGQWE LHHN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	146	ERKRRE
2	142	147	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00840.1.g00090.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685471.1	1e-101	transcription factor bHLH19-like
TrEMBL	A0A368SM72	1e-100	A0A368SM72_SETIT; Uncharacterized protein
TrEMBL	K4ACR6	1e-100	K4ACR6_SETIT; Uncharacterized protein
STRING	Si036673m	1e-100	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13896	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	1e-22	bHLH family protein