PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00841.1.g00020.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 176aa    MW: 19014.2 Da    PI: 6.6767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00841.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05153173222
                                     EETTTTEEESSHHHHHHHHHH CS
                         zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                                     +C+ C+k+F++ + L+ H + 
  Zpz_sc00841.1.g00020.1.sm.mkhc 153 SCNSCSKTFNSEMALQDHKKA 173
                                     7*****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-6147176No hitNo description
PROSITE profilePS5015710.554152176IPR007087Zinc finger, C2H2
PROSITE patternPS000280154176IPR007087Zinc finger, C2H2
PfamPF128741.3E-4154176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEFWGLEVKP GMAVKCVPGD DYILHLSQAA LGESKKANDN AIMYVKVDDQ KLAIGTLSAD  60
KYPQIQFDLG SSDEDDSSKD DESDEDDEEE TPKKPEAGKK RVAENALKTP ASDKKAKVAT  120
LSGQKTGSKN THVATPHPAK QSSKTPKSGG SMSCNSCSKT FNSEMALQDH KKAKKH
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00841.1.g00020.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899086.11e-44histone deacetylase HDT1-like
SwissprotQ9M4U53e-33HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLA0A0D3GBQ03e-67A0A0D3GBQ0_9ORYZ; Uncharacterized protein
STRINGOBART05G28290.15e-68(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.19e-17histone deacetylase 2C