PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00843.1.g00070.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 167aa    MW: 19605.7 Da    PI: 9.7958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00843.1.g00070.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-064466123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    ++C+ C+k F r  nL+ H r H
  Zpz_sc00843.1.g00070.1.sm.mkhc 44 FVCEVCNKGFQREQNLQLHRRGH 66
                                    89*******************88 PP
2zf-C2H2140.00014121143123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     +kC +C+k++  +s+ k H + +
  Zpz_sc00843.1.g00070.1.sm.mkhc 121 WKCDKCTKRYAVQSDWKAHSKIC 143
                                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.03E-84366No hitNo description
Gene3DG3DSA:3.30.160.601.6E-64366IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00414466IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0944466IPR007087Zinc finger, C2H2
PfamPF121717.5E-64466IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SMARTSM0035515086116IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.2E-5109142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.03E-8116141No hitNo description
SMARTSM00355160121141IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDKKRASLFL LLSYQFATYT YETPDPDAEV IALTPKTLMA TNRFVCEVCN KGFQREQNLQ  60
LHRRGHNLPW KLKQKDPSQA QRRRVYTCPE PTCAHHDPAR ALGDLTGIKK HFCRKHGEKK  120
WKCDKCTKRY AVQSDWKAHS KICGTREYRC DCGTLFSRYV LLVLYVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-21117165351Zinc finger protein JACKDAW
5b3h_F2e-21117165351Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00843.1.g00070.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548641e-178AY754864.1 Zea mays INDETERMINATE-related protein 10 mRNA, complete cds.
GenBankBT0542581e-178BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105281.21e-101INDETERMINATE-related protein 10
SwissprotQ8GYC12e-88IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
SwissprotQ9ZUL39e-88IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A3L6EVK81e-99A0A3L6EVK8_MAIZE; Protein indeterminate-domain 5, chloroplastic
TrEMBLB7ZY662e-99B7ZY66_MAIZE; Indeterminate domain p10
STRINGSb04g032140.17e-99(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.17e-91indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]